Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1316.6 643 100.0
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1266.5 643 95.3
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 0.0e+00 1260.0 643 94.9
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1257.7 644 95.0
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 0.0e+00 1256.1 643 95.0
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1255.4 643 95.0
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 0.0e+00 1253.4 643 94.9
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 0.0e+00 1244.6 643 93.6
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1239.6 643 93.6
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 0.0e+00 1239.6 643 93.6
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 0.0e+00 1239.6 643 93.2
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 0.0e+00 1236.5 644 93.6
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1235.7 643 93.3
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 0.0e+00 1234.2 643 92.7
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 0.0e+00 1225.7 643 92.1
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1218.4 670 89.9
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 0.0e+00 1169.8 651 86.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 0.0e+00 1156.0 681 83.7
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 0.0e+00 1153.7 670 86.9
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1096.3 646 80.8
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1091.3 558 95.5
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1090.9 651 78.6
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1085.9 558 95.2
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 0.0e+00 1085.5 651 78.0
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 0.0e+00 1084.7 651 78.2
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1077.0 651 77.6
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 8.8e-312 1072.8 652 77.9
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.3e-311 1072.4 650 78.5
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 6.6e-311 1070.1 651 77.7
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.6e-309 1065.4 645 77.8
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.2e-307 1059.3 651 77.6
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.5e-307 1058.9 652 76.7
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 5.9e-307 1057.0 651 76.2
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 1.7e-306 1055.4 652 77.5
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 2.9e-306 1054.7 654 77.2
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 3.8e-306 1054.3 648 76.9
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.0e-306 1053.9 647 78.8
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 5.0e-306 1053.9 650 76.9
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.1e-305 1052.7 652 77.1
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 9.4e-305 1049.7 648 76.5
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 4.7e-304 1047.3 650 76.3
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 6.1e-304 1047.0 651 75.7
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 7.9e-304 1046.6 647 77.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-303 1045.4 651 75.3
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 3.0e-303 1044.6 704 72.6
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.0e-303 1044.6 651 76.3
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 651 76.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 4.4e-302 1040.8 657 76.4
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 7.4e-302 1040.0 655 76.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.3e-301 1039.3 652 76.8
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.3e-301 1039.3 645 77.1
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.2e-301 1038.5 651 76.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 4.8e-301 1037.3 655 76.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.1e-300 1036.2 644 76.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.8e-300 1035.4 654 76.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.1e-300 1034.2 658 76.7
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 7.0e-300 1033.5 659 76.3
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.2e-299 1032.7 661 75.0
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 5.9e-299 1030.4 656 76.2
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.7e-298 1028.9 651 75.6
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.7e-298 1028.9 651 75.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.9e-298 1028.1 651 76.2
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.4e-297 1025.8 674 74.5
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 2.5e-297 1025.0 650 75.4
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 4.2e-297 1024.2 651 75.3
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.7e-296 1021.5 659 75.3
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.7e-296 1020.8 657 74.6
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 6.1e-296 1020.4 651 74.8
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 3.9e-295 1017.7 657 74.7
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 3.9e-295 1017.7 657 74.7
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 9.7e-294 1013.1 646 75.4
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.3e-293 1012.7 680 71.3
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.8e-293 1011.5 657 74.1
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 4.8e-293 1010.7 707 69.7
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.4e-292 1009.2 658 74.2
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 2.4e-292 1008.4 649 73.8
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 2.4e-292 1008.4 657 73.8
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.2e-291 1006.1 604 78.8
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 4.2e-289 997.7 678 72.1
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.6e-288 995.7 655 73.3
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.7e-286 987.3 677 71.2
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 9.7e-286 986.5 651 73.4
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 2.4e-284 981.9 596 79.5
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 3.1e-284 981.5 650 73.2
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 3.1e-284 981.5 679 70.5
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 9.1e-284 979.9 659 71.8
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.2e-283 979.5 631 75.8
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.0e-282 976.5 651 72.5
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 6.5e-282 973.8 661 71.3
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.5e-282 973.4 665 71.7
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.7e-280 967.6 703 68.1
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 2.6e-278 961.8 662 70.8
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.7e-277 959.1 655 71.9
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 2.8e-277 958.4 667 70.0
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 3.7e-277 958.0 662 70.4
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 8.6e-274 946.8 663 69.8
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.4e-270 934.5 590 75.6
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.7e-269 932.6 643 70.1
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.4e-268 929.5 665 69.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 3.9e-266 921.4 667 67.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.1e-265 919.8 634 72.2
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 5.6e-265 917.5 651 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 3.6e-264 914.8 669 66.2
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.8e-262 907.5 549 78.5
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.7e-261 906.0 669 67.0
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 2.2e-261 905.6 651 66.7
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 3.3e-257 891.7 659 66.5
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.1e-255 886.7 669 64.7
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.1e-255 885.2 698 63.9
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 3.1e-255 885.2 801 58.9
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 5.8e-254 880.9 669 65.3
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.9e-250 868.2 640 67.0
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 6.6e-250 867.5 530 77.2
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.3e-241 838.6 665 63.3
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 6.4e-237 824.3 647 66.6
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.1e-232 809.3 485 78.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 6.2e-232 807.7 868 52.0
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.5e-230 803.1 500 75.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.8e-224 781.6 491 80.7
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.3e-218 763.5 669 59.0
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 8.4e-213 744.2 527 70.6
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.2e-205 719.5 643 60.0
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 8.2e-192 674.5 629 55.2
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 5.3e-191 671.8 652 53.2
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.5e-190 670.2 509 66.0
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 4.5e-190 668.7 643 59.9
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 1.8e-183 646.7 712 48.5
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.2e-180 634.8 650 52.2
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 7.2e-180 634.8 659 52.2
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.9e-172 610.1 320 93.4
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 2.0e-169 600.1 389 73.5
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.5e-164 583.9 337 82.5
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.1e-159 565.8 654 50.9
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.2e-153 547.7 660 47.1
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.6e-141 505.4 366 67.8
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.4e-137 493.0 348 73.9
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 9.2e-135 485.0 414 67.1
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 8.9e-130 468.4 276 80.1
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-124 449.9 641 42.0
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.3e-117 427.2 643 39.8
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.6e-115 421.0 318 65.4
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 3.8e-104 383.3 382 55.8
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 2.9e-96 357.1 233 71.7
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 3.4e-81 307.0 427 41.7
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 5.0e-80 303.1 483 38.3
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 7.4e-76 289.3 648 31.3
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.8e-75 287.3 501 35.9
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 4.1e-74 283.5 231 61.5
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-72 278.5 296 52.4
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 2.3e-69 267.7 228 56.1
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.0e-64 250.0 203 59.6
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 5.0e-64 250.0 555 35.9
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-57 228.8 272 46.3
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 9.8e-44 182.6 139 71.9
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.5e-39 167.9 146 63.0
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.9e-31 141.7 108 66.7
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.8e-29 135.2 112 60.7
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 2.3e-29 134.8 92 75.0
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.6e-28 131.3 229 38.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 2.3e-24 118.2 127 51.2
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.5e-23 115.5 68 76.5
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 1.9e-23 115.2 80 62.5
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.0e-20 105.1 61 73.8
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 3.4e-20 104.4 59 72.9
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 3.4e-20 104.4 110 49.1
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 5.8e-20 103.6 74 73.0
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.4e-18 98.2 141 39.7
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 5.4e-18 97.1 69 60.9
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 2.1e-17 95.1 79 62.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.5e-15 89.0 66 63.6
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 8.1e-14 83.2 50 78.0
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-13 82.0 50 78.0
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.2e-12 79.3 46 82.6
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.5e-12 79.0 53 69.8
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 2.0e-12 78.6 52 76.9
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.9e-11 73.9 42 83.3
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 2.4e-10 71.6 37 89.2
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 3.2e-10 71.2 73 47.9
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.1e-09 68.6 48 60.4
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 2.5e-07 61.6 52 59.6
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.2e-06 59.3 48 56.2


User provided reference genes

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