Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.4e-259 898.3 434 100.0
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.4e-214 749.6 504 77.2
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 8.2e-212 740.3 463 79.7
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 4.1e-211 738.0 463 79.7
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.3e-209 733.0 466 78.5
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 2.0e-205 719.2 465 78.1
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.6e-205 718.8 472 78.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 7.0e-203 710.7 463 77.1
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 7.7e-202 707.2 462 76.4
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 7.7e-202 707.2 462 76.4
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 8.5e-201 703.7 464 75.9
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 1.2e-199 699.9 463 76.2
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 2.1e-199 699.1 463 75.4
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 2.1e-199 699.1 456 77.2
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 6.1e-199 697.6 462 75.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.5e-197 693.0 460 75.7
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 9.7e-197 690.3 480 72.3
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.6e-194 682.9 458 74.7
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 8.5e-193 677.2 465 74.0
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 3.6e-191 671.8 431 79.4
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 6.8e-190 667.5 481 70.7
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 1.4e-187 659.8 453 70.9
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.9e-184 649.4 504 69.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 8.6e-177 624.0 450 66.4
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 3.6e-175 618.6 452 66.6
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 2.3e-174 615.9 450 66.2
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 2.0e-173 612.8 450 65.8
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 4.4e-173 611.7 450 66.2
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 7.5e-173 610.9 450 66.4
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 4.9e-172 608.2 450 65.3
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 4.1e-171 605.1 462 64.7
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 5.4e-171 604.7 450 65.1
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 5.4e-171 604.7 448 66.5
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 1.0e-169 600.5 450 64.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 1.3e-169 600.1 450 65.1
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.3e-169 600.1 448 66.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.7e-169 599.7 452 64.2
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 1.7e-169 599.7 459 63.8
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 6.6e-169 597.8 468 62.8
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 8.6e-169 597.4 448 65.6
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 3.3e-168 595.5 450 64.7
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 4.3e-168 595.1 448 64.3
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.6e-168 594.7 448 66.1
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 7.3e-168 594.3 452 63.7
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 1.2e-167 593.6 450 64.2
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 1.6e-167 593.2 453 63.8
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.8e-167 592.4 450 65.6
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 3.6e-167 592.0 450 64.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 4.7e-167 591.7 448 65.6
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.7e-167 591.7 448 65.6
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 1.8e-166 589.7 450 64.2
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 1.2e-165 587.0 456 63.2
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 2.6e-165 585.9 450 64.0
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 3.4e-165 585.5 456 63.6
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 5.8e-165 584.7 448 61.2
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 5.8e-165 584.7 471 60.5
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 5.8e-165 584.7 450 63.3
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.3e-164 583.6 450 62.9
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 2.9e-164 582.4 487 60.6
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 2.9e-164 582.4 450 62.4
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 6.4e-164 581.3 450 62.4
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 6.4e-164 581.3 448 62.7
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.4e-163 580.1 470 61.5
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 1.4e-163 580.1 452 64.4
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 1.9e-163 579.7 447 63.1
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 2.4e-163 579.3 453 62.7
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 7.0e-163 577.8 449 63.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 9.2e-163 577.4 450 61.6
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 9.2e-163 577.4 512 56.6
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 9.2e-163 577.4 452 63.7
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 1.6e-162 576.6 450 64.0
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 2.7e-162 575.9 450 64.2
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 2.7e-162 575.9 451 62.1
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.7e-162 575.9 447 63.3
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 6.0e-162 574.7 456 62.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 6.0e-162 574.7 450 62.4
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 7.8e-162 574.3 447 62.9
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.0e-161 573.9 447 62.6
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 1.0e-161 573.9 447 63.1
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 1.3e-161 573.5 450 64.2
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 1.7e-161 573.2 449 63.7
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 3.0e-161 572.4 449 62.4
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 3.9e-161 572.0 448 62.3
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 5.1e-161 571.6 446 63.2
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 1.5e-160 570.1 447 63.1
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 4.3e-160 568.5 450 60.7
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 1.2e-159 567.0 449 63.5
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 1.2e-159 567.0 449 63.0
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 2.1e-159 566.2 448 63.6
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 3.6e-159 565.5 449 63.3
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 8.9e-158 560.8 449 62.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 2.6e-157 559.3 459 61.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 4.4e-157 558.5 447 60.4
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 5.8e-157 558.1 451 62.1
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 2.2e-156 556.2 446 59.6
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 2.4e-155 552.7 460 60.2
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 3.2e-155 552.4 449 61.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 7.1e-155 551.2 455 58.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 6.0e-154 548.1 447 58.8
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 5.6e-152 541.6 527 53.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.4e-150 537.0 449 59.2
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 8.9e-150 534.3 455 58.5
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 4.6e-146 521.9 470 57.2
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.7e-145 520.0 464 55.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 2.8e-143 512.7 448 57.4
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 1.0e-137 494.2 449 57.0
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 1.3e-137 493.8 449 56.8
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.9e-137 492.3 452 54.9
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.9e-136 490.0 431 57.1
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.2e-133 480.7 409 58.4
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 3.8e-124 449.1 369 62.1
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 4.2e-123 445.7 485 47.4
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.1e-122 443.4 276 80.8
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 6.1e-114 415.2 453 46.6
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 8.5e-108 394.8 345 57.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 3.2e-107 392.9 366 53.6
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.1e-106 390.2 366 53.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 6.9e-102 375.2 455 45.1
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.0e-96 357.1 267 63.7
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 3.7e-87 326.2 238 67.6
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.7e-82 310.1 168 85.1
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.7e-79 300.8 242 62.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 9.1e-78 295.0 270 57.0
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 8.5e-76 288.5 235 62.6
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.7e-71 274.2 155 80.6
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.2e-66 258.1 271 50.9
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 5.0e-60 236.1 182 59.3
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 5.2e-57 226.1 508 29.3
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 4.1e-54 216.5 164 60.4
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 7.5e-48 195.7 174 57.5
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.7e-44 184.5 122 68.0
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 6.9e-25 119.4 81 66.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.9e-23 113.2 83 59.0
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 6.4e-23 112.8 80 65.0
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 7.1e-22 109.4 55 89.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.1e-17 95.5 81 56.8
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.8e-17 94.7 71 57.7
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 5.3e-17 93.2 81 55.6
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.4e-14 84.3 74 56.8
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 2.7e-13 80.9 83 48.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.8e-12 78.2 83 43.4
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.5e-11 74.3 74 51.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.1e-10 71.2 46 65.2
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.7e-07 61.6 39 69.2


User provided reference genes

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