Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1317.8 643 100.0
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 0.0e+00 1277.3 643 96.4
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1273.8 643 96.3
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1265.8 643 95.3
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 0.0e+00 1255.4 643 94.9
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 0.0e+00 1252.3 643 94.6
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1251.5 644 94.1
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 0.0e+00 1246.9 643 93.3
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 0.0e+00 1243.8 643 93.3
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 0.0e+00 1239.2 644 93.3
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1238.8 643 93.2
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 0.0e+00 1238.8 643 93.2
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1234.9 643 92.8
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 0.0e+00 1233.4 643 92.4
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 0.0e+00 1228.0 643 91.9
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1221.1 670 89.6
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 0.0e+00 1174.1 670 88.2
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 0.0e+00 1173.7 651 86.2
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 0.0e+00 1156.4 681 83.8
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1102.4 558 96.2
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1099.7 558 96.1
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1097.0 646 81.0
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1092.0 651 78.3
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 0.0e+00 1088.6 651 77.9
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 0.0e+00 1085.5 651 78.2
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1081.6 651 77.6
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 0.0e+00 1075.5 652 78.2
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.4e-312 1073.9 651 78.2
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 8.8e-311 1069.7 650 78.5
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 6.3e-309 1063.5 645 77.7
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 8.2e-309 1063.1 654 78.4
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 2.4e-308 1061.6 652 76.8
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.2e-307 1059.3 651 77.7
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 1.5e-307 1058.9 650 77.4
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 2.6e-307 1058.1 650 77.5
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 5.9e-307 1057.0 652 77.6
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.0e-306 1056.2 651 76.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.3e-306 1055.8 652 77.5
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.9e-306 1054.7 651 76.2
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 6.5e-306 1053.5 650 77.2
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 3.2e-305 1051.2 647 78.7
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 4.2e-305 1050.8 650 76.8
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 7.9e-304 1046.6 647 77.9
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 8.8e-303 1043.1 652 77.0
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 8.8e-303 1043.1 651 75.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.1e-302 1042.7 661 75.8
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.5e-302 1042.3 704 72.6
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 651 76.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 3.3e-302 1041.2 644 77.3
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 3.3e-302 1041.2 657 76.4
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.4e-302 1040.8 655 76.2
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 2.2e-301 1038.5 658 77.2
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.8e-301 1038.1 655 76.5
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.8e-301 1037.3 651 75.9
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 6.3e-301 1036.9 645 77.1
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 6.3e-301 1036.9 659 76.8
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.4e-300 1035.8 654 76.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.8e-300 1035.4 651 75.3
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 5.3e-300 1033.9 651 76.0
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.2e-298 1028.5 651 75.9
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 3.8e-298 1027.7 650 75.7
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.5e-298 1026.9 651 75.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.1e-297 1026.2 651 76.0
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.1e-297 1026.2 656 75.8
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 5.5e-297 1023.8 674 74.2
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.6e-296 1022.3 651 75.1
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.0e-295 1019.6 657 74.7
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.0e-295 1019.6 657 74.7
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 6.7e-295 1016.9 680 72.2
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.5e-294 1015.8 659 74.8
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.0e-294 1015.4 657 74.0
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.6e-294 1015.0 707 70.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.2e-293 1011.9 657 74.1
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.8e-292 1008.8 657 73.8
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 4.1e-292 1007.7 651 74.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 5.3e-292 1007.3 646 74.6
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 3.5e-291 1004.6 658 73.6
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 7.7e-291 1003.4 604 78.5
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.9e-289 998.8 679 72.5
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 7.2e-289 996.9 655 73.6
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.3e-285 986.1 679 71.1
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.3e-285 986.1 677 71.2
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.2e-285 985.3 650 73.8
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 2.8e-285 984.9 651 73.3
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 3.7e-285 984.6 596 79.7
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 3.1e-284 981.5 651 73.1
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.0e-282 976.5 631 75.1
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.2e-282 975.3 659 71.9
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 6.5e-282 973.8 661 71.1
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.5e-281 970.7 665 71.4
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.2e-281 970.3 703 68.7
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 3.4e-278 961.4 655 72.2
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 7.0e-276 953.7 667 69.6
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 5.9e-275 950.7 662 69.8
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 2.3e-274 948.7 661 69.4
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 3.6e-272 941.4 660 69.2
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 6.1e-272 940.6 590 76.6
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.0e-271 939.9 643 70.8
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.5e-270 936.0 665 69.6
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 4.9e-269 931.0 651 70.4
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 3.6e-264 914.8 634 72.2
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 6.1e-264 914.1 667 66.3
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 6.8e-263 910.6 669 65.8
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 6.8e-263 910.6 651 67.4
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 8.9e-263 910.2 669 67.0
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.9e-261 904.4 549 78.3
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 2.3e-258 895.6 667 65.4
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 3.0e-258 895.2 659 66.6
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 2.5e-257 892.1 698 64.8
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 2.6e-254 882.1 801 58.8
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 5.8e-254 880.9 669 64.9
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.0e-250 868.6 640 67.2
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 3.9e-250 868.2 530 77.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.5e-241 839.7 665 63.2
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.2e-237 825.9 647 66.9
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 6.6e-234 814.3 868 52.4
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 2.0e-230 802.7 500 75.8
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.9e-229 798.1 482 78.4
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.6e-224 781.9 491 80.9
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.3e-218 763.5 669 58.6
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 5.8e-214 748.0 527 71.2
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.5e-204 716.1 643 60.0
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 1.5e-193 680.2 654 54.1
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 9.7e-193 677.6 629 55.3
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.0e-190 669.8 509 65.4
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 2.3e-186 656.4 643 57.9
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.8e-184 648.7 709 48.5
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 7.2e-180 634.8 659 52.4
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.0e-178 630.9 650 52.0
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 2.2e-168 596.7 320 90.3
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-167 593.6 388 72.7
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.5e-164 583.9 337 82.5
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.3e-156 556.2 654 50.0
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 7.2e-156 555.1 660 47.9
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 8.6e-141 505.0 366 67.2
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.4e-137 492.7 348 73.9
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 3.6e-131 473.0 414 65.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.4e-127 460.3 276 78.6
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.3e-124 449.5 641 42.7
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.2e-119 433.3 643 40.1
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 3.6e-115 419.9 318 65.4
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 7.6e-105 385.6 382 56.8
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 4.0e-98 363.2 233 73.4
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 9.0e-82 308.9 424 41.5
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 3.2e-79 300.4 488 39.1
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 5.1e-77 293.1 494 36.8
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 4.3e-76 290.0 648 31.0
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.8e-72 276.9 296 52.0
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 5.0e-72 276.6 231 58.4
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 9.4e-71 272.3 228 56.6
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.5e-64 249.2 203 60.1
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 6.1e-62 243.0 555 35.3
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.7e-57 227.6 272 45.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.1e-42 179.1 139 71.2
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.7e-41 172.9 146 64.4
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-31 142.5 108 67.6
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.8e-29 135.2 112 60.7
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 1.5e-28 132.1 92 73.9
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.5e-28 132.1 229 38.4
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 1.2e-25 122.5 126 52.4
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 5.0e-24 117.1 80 65.0
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 3.3e-23 114.4 68 75.0
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 2.8e-22 111.3 126 48.4
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 5.2e-21 107.1 61 75.4
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 7.5e-20 103.2 59 71.2
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 3.7e-19 100.9 74 71.6
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 4.1e-18 97.4 141 39.7
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 7.1e-18 96.7 69 60.9
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.2e-17 95.9 79 63.3
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.5e-15 89.0 66 63.6
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.3e-15 87.4 50 82.0
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 2.8e-14 84.7 46 84.8
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.8e-14 84.7 50 76.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 4.7e-14 84.0 79 58.2
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 1.3e-11 75.9 52 76.9
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.9e-11 73.9 42 83.3
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 2.4e-10 71.6 37 89.2
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 7.1e-10 70.1 73 47.9
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.1e-09 68.6 48 60.4
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 6.0e-09 67.0 68 52.9
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.9e-07 62.0 48 60.4
Gorai.009G020400 Gossypium raimondii HOM05D000639 ORTHO05D005966 2.1e-06 58.5 277 26.0
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 3.6e-06 57.8 126 32.5
Gohir.A05G019000 Gossypium hirsutum HOM05D000639 ORTHO05D005966 6.2e-06 57.0 277 25.6


User provided reference genes

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