Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00846 Brassica carinata HOM05D002794 ORTHO05D013792 2.2e-36 155.2 86 100.0
C07p51290 Brassica napus HOM05D002794 ORTHO05D013792 3.3e-24 114.8 86 84.9
A03p52850 Brassica napus HOM05D002794 ORTHO05D013792 9.7e-24 113.2 86 70.9
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 7.2e-11 70.5 79 68.4
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 7.2e-11 70.5 78 69.2
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 7.2e-11 70.5 78 69.2
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 2.1e-10 68.9 78 67.9
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 6.1e-10 67.4 72 58.3
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 1.0e-09 66.6 78 64.1
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 1.0e-09 66.6 78 66.7
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 1.0e-09 66.6 78 66.7
BNapus_Darmor_BZH_scaffold_273p00070 Brassica napus HOM05D002794 ORTHO05D013792 1.8e-09 65.9 72 65.3
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 1.8e-09 65.9 78 65.4
Zm00001eb271720 Zea mays HOM05D002794 ORTHO05D003763 2.3e-09 65.5 76 55.3
C03p44500 Brassica napus HOM05D002794 ORTHO05D013792 3.0e-09 65.1 72 65.3
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 4.0e-09 64.7 79 63.3
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 4.0e-09 64.7 77 57.1
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 4.0e-09 64.7 75 62.7
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 4.0e-09 64.7 79 63.3
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 4.0e-09 64.7 77 54.5
Carub.0006s3292 Capsella rubella HOM05D002794 ORTHO05D003763 6.8e-09 63.9 77 46.8
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 6.8e-09 63.9 76 63.2
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 8.9e-09 63.5 78 65.4
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 8.9e-09 63.5 78 65.4
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 8.9e-09 63.5 75 62.7
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 8.9e-09 63.5 75 62.7
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 8.9e-09 63.5 75 62.7
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.2e-08 63.2 79 62.0
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 1.2e-08 63.2 78 55.1
vmacro03843 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.2e-08 63.2 81 55.6
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 1.5e-08 62.8 79 51.9
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 1.5e-08 62.8 79 59.5
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 1.5e-08 62.8 86 47.7
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 2.0e-08 62.4 77 59.7
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 2.0e-08 62.4 75 61.3
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 2.0e-08 62.4 79 60.8
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 2.6e-08 62.0 72 55.6
Nitab4.5_0007957g0040 Nicotiana tabacum HOM05D002794 ORTHO05D003763 2.6e-08 62.0 72 48.6
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 2.6e-08 62.0 75 58.7
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 2.6e-08 62.0 75 58.7
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 3.4e-08 61.6 76 59.2
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 3.4e-08 61.6 78 53.8
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 3.4e-08 61.6 75 61.3
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 3.4e-08 61.6 75 61.3
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 3.4e-08 61.6 75 61.3
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 3.4e-08 61.6 75 61.3
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 4.4e-08 61.2 76 60.5
Oeu050833.1 Olea europaea HOM05D002794 ORTHO05D003763 4.4e-08 61.2 77 59.7
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 4.4e-08 61.2 76 60.5
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 5.7e-08 60.8 78 59.0
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 5.7e-08 60.8 79 59.5
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 7.5e-08 60.5 75 60.0
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 7.5e-08 60.5 66 51.5
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 7.5e-08 60.5 66 51.5
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 7.5e-08 60.5 66 51.5
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 7.5e-08 60.5 76 59.2
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 9.8e-08 60.1 77 59.7
Eucgr.D00651 Eucalyptus grandis HOM05D002794 ORTHO05D003763 9.8e-08 60.1 76 60.5
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 9.8e-08 60.1 79 58.2
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 9.8e-08 60.1 79 53.2
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 9.8e-08 60.1 76 59.2
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 9.8e-08 60.1 76 59.2
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 1.3e-07 59.7 75 61.3
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 1.3e-07 59.7 80 57.5
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 1.7e-07 59.3 80 52.5
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 1.7e-07 59.3 77 58.4
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 1.7e-07 59.3 80 52.5
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 1.7e-07 59.3 75 60.0
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 2.2e-07 58.9 79 55.7
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 2.2e-07 58.9 78 57.7
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 2.2e-07 58.9 75 58.7
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 2.2e-07 58.9 76 51.3
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 2.8e-07 58.5 74 59.5
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 2.8e-07 58.5 75 57.3
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 2.8e-07 58.5 78 57.7
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 2.8e-07 58.5 77 58.4
SalBow3G1823 Salvia bowleyana HOM05D002794 ORTHO05D003763 2.8e-07 58.5 80 52.5
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 2.8e-07 58.5 77 58.4
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 3.7e-07 58.2 77 57.1
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 3.7e-07 58.2 77 57.1
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 3.7e-07 58.2 79 57.0
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 3.7e-07 58.2 75 58.7
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 3.7e-07 58.2 78 57.7
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 3.7e-07 58.2 77 57.1
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 3.7e-07 58.2 75 58.7
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 3.7e-07 58.2 79 49.4
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 4.9e-07 57.8 80 56.2
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 4.9e-07 57.8 76 57.9
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 4.9e-07 57.8 79 57.0
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 4.9e-07 57.8 76 57.9
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 4.9e-07 57.8 80 50.0
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 6.3e-07 57.4 77 58.4
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 6.3e-07 57.4 80 56.2
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 8.3e-07 57.0 75 58.7
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 1.1e-06 56.6 77 55.8
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.4e-06 56.2 78 55.1
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.4e-06 56.2 76 56.6
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 1.4e-06 56.2 76 57.9
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 1.4e-06 56.2 76 57.9
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 1.4e-06 56.2 75 58.7
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 1.4e-06 56.2 77 57.1
RcHm_v2.0_Chr5g0006931 Rosa chinensis HOM05D002794 ORTHO05D013792 1.4e-06 56.2 72 45.8
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 1.4e-06 56.2 74 58.1
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 1.8e-06 55.8 73 46.6
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.8e-06 55.8 76 56.6
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 1.8e-06 55.8 78 55.1
SalBow1G1119 Salvia bowleyana HOM05D002794 ORTHO05D013792 1.8e-06 55.8 81 49.4
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 2.4e-06 55.5 78 56.4
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 3.1e-06 55.1 82 46.3
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 3.1e-06 55.1 79 55.7
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 3.1e-06 55.1 79 55.7
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 3.1e-06 55.1 79 55.7
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 3.1e-06 55.1 77 49.4
GSVIVG01002655001 Vitis vinifera HOM05D002794 ORTHO05D003763 3.1e-06 55.1 75 57.3
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 5.4e-06 54.3 76 57.9
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 5.4e-06 54.3 77 55.8
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 5.4e-06 54.3 76 56.6
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 5.4e-06 54.3 78 59.0
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 5.4e-06 54.3 76 56.6
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 5.4e-06 54.3 79 49.4
BcaC08g45977 Brassica carinata HOM05D014007 ORTHO05D016107 7.0e-06 53.9 75 57.3
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 7.0e-06 53.9 76 56.6
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 7.0e-06 53.9 75 57.3
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 9.2e-06 53.5 76 50.0
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 9.2e-06 53.5 77 55.8


User provided reference genes

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