Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-73 279.3 135 100.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-64 249.6 135 92.6
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.4e-64 249.6 158 80.4
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 3.0e-64 248.4 158 78.5
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.5e-63 246.1 158 78.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 3.4e-63 245.0 158 78.5
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.7e-62 241.5 158 75.9
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 9.2e-61 236.9 158 74.7
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 4.6e-60 234.6 158 74.7
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 4.6e-60 234.6 158 74.7
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.0e-59 233.4 158 74.7
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-59 233.4 158 74.7
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.0e-59 233.4 158 74.7
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.1e-57 225.7 133 78.9
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.1e-57 225.7 158 70.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 3.6e-57 224.9 158 70.9
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 3.6e-57 224.9 158 72.2
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.4e-56 223.0 158 69.0
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.4e-56 223.0 158 69.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.4e-56 223.0 158 69.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.8e-56 222.6 158 69.6
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 3.1e-56 221.9 158 69.6
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 6.8e-56 220.7 158 70.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.0e-55 219.2 158 67.7
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 3.4e-55 218.4 158 69.6
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 3.4e-55 218.4 158 69.6
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 9.8e-55 216.9 158 67.1
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 9.8e-55 216.9 158 68.4
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.3e-54 216.5 158 67.1
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.3e-54 216.5 158 67.1
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.7e-54 214.9 156 66.7
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 6.4e-54 214.2 158 65.8
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.1e-53 213.4 158 66.5
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.4e-53 212.2 158 65.8
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 4.1e-53 211.5 158 65.8
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.1e-53 211.5 158 65.8
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 5.4e-53 211.1 158 65.8
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 9.2e-53 210.3 158 63.9
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 9.2e-53 210.3 158 64.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.6e-52 209.5 158 64.6
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.0e-52 209.1 158 65.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 2.0e-52 209.1 158 63.3
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 3.5e-52 208.4 158 63.9
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 3.5e-52 208.4 158 63.9
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 6.0e-52 207.6 158 64.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.0e-52 207.6 158 65.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.3e-51 206.5 158 63.9
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.3e-51 206.5 133 71.4
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.7e-51 206.1 158 63.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.7e-51 206.1 158 65.8
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.3e-51 205.7 158 63.3
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 2.3e-51 205.7 158 65.2
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.0e-51 205.3 158 63.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 3.9e-51 204.9 158 64.6
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.9e-51 204.9 158 63.3
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.9e-51 204.9 158 63.3
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.9e-51 204.9 158 64.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 5.0e-51 204.5 158 62.7
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.0e-51 204.5 158 63.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 6.6e-51 204.1 158 62.0
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 6.6e-51 204.1 158 63.3
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 8.6e-51 203.8 158 63.3
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 8.6e-51 203.8 158 63.9
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 8.6e-51 203.8 158 63.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 8.6e-51 203.8 158 62.7
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 8.6e-51 203.8 158 63.3
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.1e-50 203.4 158 62.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.1e-50 203.4 158 63.3
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 2.5e-50 202.2 158 62.7
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.3e-50 201.8 158 60.1
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.3e-50 201.8 158 60.1
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.3e-50 201.8 158 60.1
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 4.3e-50 201.4 158 62.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 4.3e-50 201.4 158 63.3
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 5.6e-50 201.1 158 63.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 7.3e-50 200.7 158 63.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.3e-50 200.7 158 62.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.3e-50 200.7 158 62.0
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 7.3e-50 200.7 158 60.8
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 9.5e-50 200.3 158 60.8
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.2e-49 199.9 158 61.4
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.1e-49 199.1 158 62.0
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.1e-49 199.1 158 62.0
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 2.8e-49 198.7 158 62.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 4.7e-49 198.0 158 63.3
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 4.7e-49 198.0 165 58.2
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 6.2e-49 197.6 158 61.4
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 8.1e-49 197.2 158 60.8
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.1e-48 196.8 158 61.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.8e-48 196.1 158 60.1
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.3e-48 195.7 158 60.1
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-48 195.7 158 60.1
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-48 195.7 158 60.1
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-48 195.7 158 60.1
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.1e-48 195.3 158 61.4
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.1e-48 195.3 158 58.9
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 5.2e-48 194.5 158 60.8
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 5.2e-48 194.5 158 59.5
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 8.9e-48 193.7 161 59.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.9e-48 193.7 158 59.5
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 8.9e-48 193.7 158 59.5
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.2e-47 193.4 145 66.2
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.2e-47 193.4 133 66.9
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.2e-47 193.4 158 60.1
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.5e-47 193.0 158 60.8
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.5e-47 193.0 161 57.8
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.0e-47 192.6 158 60.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 3.4e-47 191.8 161 58.4
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 9.8e-47 190.3 140 65.7
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.2e-46 189.1 158 58.9
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.2e-46 189.1 158 58.9
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.2e-46 189.1 158 58.9
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.9e-46 188.7 161 57.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 6.4e-46 187.6 156 59.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.1e-45 186.8 158 57.6
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.4e-45 185.7 158 57.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.4e-45 185.7 162 57.4
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.2e-45 185.3 161 57.1
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 5.4e-45 184.5 158 57.0
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 7.1e-45 184.1 203 51.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.1e-44 182.6 145 61.4
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.3e-43 179.9 94 91.5
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.9e-42 176.0 158 55.1
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 7.3e-42 174.1 194 46.9
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.4e-40 169.9 158 51.9
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 8.9e-40 167.2 159 53.5
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.2e-39 166.8 87 92.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.6e-39 165.6 158 51.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 7.6e-39 164.1 141 56.7
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.3e-38 163.3 158 50.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.7e-38 162.9 125 64.0
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 8.4e-38 160.6 160 53.8
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 5.4e-37 157.9 133 60.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.0e-35 153.7 115 67.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 8.6e-35 150.6 124 62.1
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 3.3e-34 148.7 158 48.1
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 4.9e-30 134.8 152 48.7
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 7.1e-29 131.0 133 49.6
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 2.5e-26 122.5 81 69.1
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 4.8e-25 118.2 113 52.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 8.1e-25 117.5 163 36.8
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.1e-25 117.5 132 52.3
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-23 112.8 125 47.2
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 5.8e-23 111.3 132 46.2
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.8e-22 108.6 81 61.7
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.4e-21 104.8 134 43.3
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.5e-18 95.9 50 86.0
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.4e-18 94.4 50 84.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-17 93.6 50 82.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 2.1e-17 92.8 50 86.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.8e-17 91.7 50 78.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.4e-16 89.4 50 74.0
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.4e-16 89.4 50 78.0
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.3e-14 83.6 50 72.0
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.2e-13 79.0 96 45.8
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 3.2e-13 79.0 86 52.3
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 3.2e-13 79.0 46 73.9
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.3e-11 72.8 78 43.6
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-10 70.5 50 62.0
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-09 66.6 119 38.7
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 4.8e-09 65.1 81 45.7


User provided reference genes

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