Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 8.5e-260 899.8 453 100.0
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 8.5e-252 873.2 453 96.9
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 3.0e-249 864.8 453 95.8
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 3.3e-248 861.3 454 96.0
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 2.4e-246 855.1 453 94.9
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 8.5e-244 846.7 478 91.0
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.2e-242 842.8 453 92.3
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 2.7e-242 841.6 453 92.7
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 7.9e-242 840.1 444 95.0
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 6.7e-241 837.0 453 92.1
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.7e-236 822.4 453 90.5
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 5.2e-233 810.8 453 88.7
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.6e-224 781.9 453 84.1
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 5.7e-208 727.6 450 78.7
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 2.2e-207 725.7 450 78.4
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 8.3e-207 723.8 453 78.1
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 2.4e-206 722.2 450 77.8
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.2e-206 721.8 455 78.2
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 4.1e-206 721.5 384 95.8
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 1.6e-205 719.5 450 78.0
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 2.0e-205 719.2 450 76.9
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 3.5e-205 718.4 454 77.1
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.3e-204 716.5 455 76.7
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 2.3e-204 715.7 466 75.3
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 3.0e-204 715.3 454 76.9
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 8.6e-204 713.8 450 76.7
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 8.6e-204 713.8 450 77.6
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 8.6e-204 713.8 454 76.4
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 8.6e-204 713.8 454 76.4
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.5e-203 713.0 464 75.2
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 1.9e-203 712.6 451 76.7
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 4.7e-202 708.0 450 76.0
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 8.0e-202 707.2 453 75.7
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 8.0e-202 707.2 450 76.9
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.1e-201 706.8 454 76.4
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 8.9e-201 703.7 451 77.2
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 8.9e-201 703.7 451 76.1
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 2.6e-200 702.2 450 75.3
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 2.6e-200 702.2 451 76.1
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 3.4e-200 701.8 447 76.3
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 3.7e-199 698.4 487 71.3
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.9e-199 698.0 453 75.7
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 2.4e-198 695.7 450 74.2
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 5.4e-198 694.5 455 75.6
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.2e-197 693.3 450 74.0
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 2.0e-197 692.6 451 74.7
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.5e-197 691.8 459 74.7
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 3.5e-197 691.8 450 74.7
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 3.5e-197 691.8 451 74.9
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 6.0e-197 691.0 450 74.2
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.3e-196 689.1 450 73.6
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 5.6e-195 684.5 450 74.0
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 1.2e-194 683.3 456 75.7
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.1e-194 682.6 456 73.7
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 4.7e-194 681.4 455 73.4
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 4.7e-194 681.4 450 72.7
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 1.4e-193 679.9 448 74.3
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 2.3e-193 679.1 457 73.5
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 3.1e-193 678.7 447 74.3
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 1.5e-192 676.4 450 72.7
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 6.4e-191 671.0 453 73.1
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 4.1e-190 668.3 484 69.8
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 7.1e-190 667.5 453 72.4
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.0e-188 663.7 453 72.6
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 1.3e-188 663.3 447 70.9
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.5e-187 659.1 480 70.0
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 3.3e-187 658.7 447 69.8
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.5e-184 649.8 491 68.2
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 5.8e-184 647.9 468 66.7
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 1.1e-182 643.7 473 69.1
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 7.1e-182 641.0 414 75.4
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.6e-181 638.3 461 69.8
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 1.3e-180 636.7 480 66.9
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 5.1e-180 634.8 450 67.8
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 1.2e-178 630.2 450 69.6
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.4e-177 626.7 440 71.1
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.2e-176 623.6 447 70.2
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 2.0e-176 622.9 467 66.8
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 2.9e-175 619.0 457 71.1
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.9e-175 618.2 407 73.2
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.6e-173 611.7 460 68.7
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 2.8e-170 602.4 450 68.0
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 9.0e-169 597.4 397 72.0
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 1.2e-168 597.0 554 58.5
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 2.4e-166 589.3 451 66.5
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 5.4e-166 588.2 492 60.8
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 2.5e-163 579.3 450 64.7
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.6e-163 577.4 513 59.5
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 1.8e-161 573.2 403 70.0
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.2e-158 562.4 514 58.2
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 3.2e-158 562.4 355 79.2
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 6.9e-153 544.7 447 63.3
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-152 543.9 494 58.5
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.7e-151 540.0 484 58.9
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.7e-149 532.7 340 75.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.5e-147 526.9 432 60.6
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 3.7e-146 522.3 325 79.4
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.2e-136 490.7 456 51.8
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 8.2e-130 468.0 301 77.4
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.5e-128 463.8 415 58.6
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 7.7e-128 461.5 456 48.9
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 1.1e-121 441.0 296 74.0
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.1e-121 441.0 505 48.3
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 5.5e-118 428.7 458 47.6
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.7e-112 409.8 341 61.6
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 6.8e-108 395.2 268 73.5
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 4.4e-107 392.5 444 45.3
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 5.9e-104 382.1 446 43.9
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 7.8e-96 355.1 433 47.8
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.3e-95 353.6 275 64.0
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 6.6e-95 352.1 230 74.3
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.9e-89 334.0 205 80.5
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 8.3e-74 282.0 254 57.1
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 7.3e-70 268.9 237 59.1
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 3.0e-63 246.9 283 47.7
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.1e-63 246.1 185 67.6
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 5.6e-62 242.7 224 50.4
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 7.3e-62 242.3 173 65.3
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 2.2e-58 230.7 461 31.2
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 7.1e-57 225.7 515 29.7
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 1.6e-56 224.6 325 44.9
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.3e-55 221.5 148 72.3
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.1e-53 214.2 459 30.7
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 2.4e-49 200.7 545 27.9
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 7.4e-46 189.1 129 69.0
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.5e-35 153.3 96 68.8
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.5e-33 147.5 110 60.9
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.5e-33 147.5 110 60.9
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.1e-32 144.4 113 63.7
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 8.7e-31 139.0 111 65.8
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.2e-26 124.4 97 56.7
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.2e-25 120.6 70 81.4
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 2.7e-24 117.5 69 79.7
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.4e-23 115.2 69 78.3
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.5e-19 100.1 58 74.1
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.8e-18 97.1 81 56.8
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 1.6e-16 91.7 183 35.0
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.7e-16 90.1 64 65.6
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 5.1e-15 86.7 83 49.4
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.0e-14 84.7 52 76.9
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 9.7e-14 82.4 51 74.5
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 3.1e-12 77.4 57 61.4
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.1e-12 77.4 58 58.6
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 2.3e-07 61.2 69 50.7
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.5e-06 58.5 36 77.8
Gohir.D10G060133 Gossypium hirsutum HOM05D005098 ORTHO05D006646 9.7e-06 55.8 35 74.3
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.7e-06 55.8 38 68.4


User provided reference genes

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