Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1454.1 723 100.0
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1451.8 723 99.9
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1408.7 723 96.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1401.3 723 96.5
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1397.5 723 97.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1340.9 723 91.8
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1318.9 723 91.0
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1303.9 723 89.9
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1285.8 724 89.0
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1284.2 723 88.8
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1282.3 723 88.4
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1196.0 736 80.6
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1167.5 726 79.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.1e-296 1023.1 721 68.1
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 1.1e-296 1023.1 723 68.9
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 5.2e-296 1020.8 721 67.8
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.2e-295 1019.6 714 68.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 2.6e-295 1018.5 725 68.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 4.2e-293 1011.1 711 68.2
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 2.7e-292 1008.4 725 68.1
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 2.3e-291 1005.4 706 68.6
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 3.0e-291 1005.0 713 68.0
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.8e-289 998.4 706 68.4
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.4e-288 996.1 721 66.9
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.8e-288 995.7 706 68.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 4.0e-288 994.6 721 67.1
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.0e-288 994.6 710 67.5
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 5.8e-287 990.7 726 66.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.3e-286 989.6 721 66.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 2.2e-286 988.8 721 66.7
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.1e-285 986.5 723 66.4
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.9e-285 985.7 721 66.7
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 7.1e-285 983.8 708 67.9
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 6.6e-283 977.2 725 66.6
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 5.6e-282 974.2 711 67.5
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 7.4e-282 973.8 706 67.6
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.4e-280 968.8 732 65.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 9.3e-277 956.8 722 64.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.5e-274 949.5 724 64.1
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 3.3e-274 948.3 710 64.6
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.7e-273 944.9 727 64.1
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 4.8e-273 944.5 721 64.5
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 4.8e-273 944.5 715 64.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.8e-273 944.5 723 63.8
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 6.2e-273 944.1 724 63.8
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.0e-270 936.8 724 64.4
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.3e-270 936.4 728 63.2
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.2e-270 935.6 714 63.9
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 2.9e-270 935.3 708 64.3
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.8e-270 934.9 727 63.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 3.8e-270 934.9 708 64.0
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.9e-270 934.5 708 64.0
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 4.9e-270 934.5 714 63.4
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 5.5e-269 931.0 705 64.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 7.1e-269 930.6 725 63.0
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 9.3e-269 930.2 722 63.7
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 4.6e-268 927.9 727 63.0
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.0e-267 926.8 707 63.5
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 6.7e-267 924.1 689 64.6
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.3e-264 914.4 722 62.5
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 5.9e-263 911.0 723 61.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 5.9e-263 911.0 656 67.2
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.7e-262 909.4 633 69.0
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.9e-262 908.7 727 63.1
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 6.5e-262 907.5 721 61.6
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.2e-260 903.3 736 59.9
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.9e-259 898.3 722 62.9
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 3.9e-259 898.3 723 62.1
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.5e-258 896.3 675 64.6
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.5e-258 896.3 721 61.3
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.4e-256 889.8 731 62.0
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 2.4e-256 889.0 714 59.9
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 3.1e-256 888.6 723 61.3
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 4.1e-256 888.3 731 60.3
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 2.2e-254 882.5 711 62.6
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 3.8e-254 881.7 720 60.7
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 4.2e-253 878.2 629 67.2
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.0e-251 872.1 625 66.9
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 6.7e-251 870.9 714 60.4
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.5e-245 852.4 625 66.7
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 4.2e-245 851.7 651 63.3
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 6.1e-244 847.8 731 57.7
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 6.3e-241 837.8 734 56.9
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 8.2e-241 837.4 589 67.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 5.3e-240 834.7 706 58.5
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.2e-239 833.6 727 58.3
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 1.0e-238 830.5 720 56.9
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.2e-238 829.3 989 47.7
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.5e-237 826.6 704 59.4
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 6.1e-236 821.2 541 71.7
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.5e-229 800.0 574 66.7
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 4.0e-227 792.0 569 65.9
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 5.4e-224 781.6 381 99.7
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.7e-223 779.2 705 56.9
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 9.5e-221 770.8 856 48.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.1e-203 712.6 983 44.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.7e-201 705.7 724 53.0
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 4.6e-183 645.6 453 68.2
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.8e-179 633.6 748 45.2
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 4.5e-170 602.4 502 60.8
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.4e-160 570.1 704 44.5
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.2e-145 520.4 626 44.7
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.0e-142 511.5 362 65.7
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.5e-128 462.6 446 53.8
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 4.3e-96 356.7 279 60.9
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 6.6e-89 332.8 254 63.4
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.5e-88 330.9 225 71.6
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 4.6e-82 310.1 270 59.3
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 2.6e-77 294.3 290 53.4
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 3.5e-66 257.3 290 47.2
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.4e-62 245.4 148 75.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.6e-58 230.3 166 69.9
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.2e-43 181.0 261 41.8
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.1e-38 166.0 154 55.2
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.3e-38 163.7 232 42.7
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.3e-36 159.1 260 37.7
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-32 145.6 169 43.2
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 1.8e-30 138.7 109 67.9
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-28 132.5 89 69.7
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.9e-28 131.3 114 54.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-27 129.4 84 72.6
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.1e-27 129.4 154 45.5
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.9e-27 128.6 109 65.1
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 5.5e-27 127.1 109 64.2
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.6e-26 125.6 84 71.4
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 9.7e-24 116.3 107 55.1
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.4e-22 112.5 131 49.6
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.1e-22 111.3 98 54.1
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 3.4e-21 107.8 74 71.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 8.5e-20 103.2 71 63.4
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 5.5e-19 100.5 97 54.6
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-18 99.4 57 86.0
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.2e-18 99.4 617 21.4
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 6.1e-18 97.1 89 60.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 6.1e-18 97.1 57 84.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 6.1e-18 97.1 57 84.2
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.8e-17 95.5 70 62.9
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.3e-17 95.1 66 66.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 6.7e-17 93.6 75 61.3
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.3e-15 89.4 74 67.6
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.3e-15 89.4 61 67.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.8e-15 88.2 58 67.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.5e-13 82.4 51 80.4
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.0e-13 82.0 55 65.5
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.6e-13 81.6 64 64.1
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.9e-13 80.5 71 57.7
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-12 79.3 52 71.2
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-11 76.3 108 39.8
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.4e-11 75.9 129 37.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.4e-11 75.9 53 62.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.5e-11 75.1 167 29.3
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 2.3e-09 68.6 43 74.4
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 2.0e-08 65.5 48 64.6
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 3.3e-08 64.7 339 21.2
BolC7t40477H Brassica oleracea HOM05D048856 ORTHO05D042196 4.4e-08 64.3 63 54.0
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 5.7e-08 63.9 74 50.0
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 7.4e-08 63.5 71 47.9
C07p00260 Brassica napus HOM05D048856 ORTHO05D042196 6.3e-07 60.5 63 54.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 8.2e-07 60.1 47 68.1
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.1e-06 57.8 42 61.9


User provided reference genes

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