Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52076 Brassica carinata HOM05D005027 ORTHO05D005978 8.6e-276 953.0 465 100.0
BcaC09g52077 Brassica carinata HOM05D005027 ORTHO05D005978 3.5e-176 622.1 304 98.4
C01p06080 Brassica napus HOM05D005027 ORTHO05D005978 3.5e-176 622.1 304 98.4
BolC1t00601H Brassica oleracea HOM05D005027 ORTHO05D005978 3.5e-176 622.1 304 98.4
A01p05480 Brassica napus HOM05D005027 ORTHO05D005978 7.3e-174 614.4 305 97.7
BraA01t00521Z Brassica rapa HOM05D005027 ORTHO05D005978 4.4e-171 605.1 305 96.4
Sp7g30580 Schrenkiella parvula HOM05D005027 ORTHO05D005978 2.5e-166 589.3 307 91.9
Thhalv10024788m.g Eutrema salsugineum HOM05D005027 ORTHO05D005978 2.3e-159 566.2 306 88.2
CARHR240800 Cardamine hirsuta HOM05D005027 ORTHO05D005978 8.4e-154 547.7 306 85.6
Carub.0007s0768 Capsella rubella HOM05D005027 ORTHO05D005978 1.0e-151 540.8 308 85.4
AL7G18920 Arabidopsis lyrata HOM05D005027 ORTHO05D005978 1.5e-150 537.0 308 85.4
AT4G32810 Arabidopsis thaliana HOM05D005027 ORTHO05D005978 7.3e-150 534.6 308 85.4
Aa31sc497G20 Aethionema arabicum HOM05D005027 ORTHO05D005978 6.5e-122 441.8 307 72.6
THA.LOC104820078 Tarenaya hassleriana HOM05D005027 ORTHO05D005978 2.8e-101 373.2 319 62.1
C01p05890 Brassica napus HOM05D005027 ORTHO05D005978 9.1e-100 368.2 209 86.6
BolC1t00569H Brassica oleracea HOM05D005027 ORTHO05D005978 1.1e-97 361.3 205 86.8
Ciclev10010609m.g Citrus clementina HOM05D005027 ORTHO05D005978 8.8e-95 351.7 245 68.6
FvH4_2g35610 Fragaria vesca HOM05D005027 ORTHO05D005978 1.1e-94 351.3 288 62.5
Atru.chr7.2090 Acer truncatum HOM05D005027 ORTHO05D005978 1.5e-94 350.9 293 61.4
Cpa.g.c24654.4 Carica papaya HOM05D005027 ORTHO05D005978 3.3e-94 349.7 260 64.6
CANSAT25G1983 Cannabis sativa HOM05D005027 ORTHO05D005978 5.7e-94 349.0 229 72.1
GSVIVG01035626001 Vitis vinifera HOM05D005027 ORTHO05D005978 1.3e-93 347.8 227 72.7
CSS0030796 Camellia sinensis var. sinensis HOM05D005027 ORTHO05D005978 1.7e-93 347.4 251 66.1
Haze_21886 Corylus avellana HOM05D005027 ORTHO05D005978 2.2e-93 347.1 292 61.6
Cfa013364 Carpinus fangiana HOM05D005027 ORTHO05D005978 2.8e-93 346.7 272 63.6
CiPaw.08G025700 Carya illinoinensis HOM05D005027 ORTHO05D005978 2.8e-93 346.7 246 68.7
Ca_15593_v3 Cicer arietinum L. HOM05D005027 ORTHO05D005978 2.8e-93 346.7 246 68.7
FAN20G3026 Fragaria x ananassa HOM05D005027 ORTHO05D005978 3.7e-93 346.3 288 61.5
QL12p041392 Quercus lobata HOM05D005027 ORTHO05D005978 3.7e-93 346.3 248 67.3
Manes.16G075700 Manihot esculenta HOM05D005027 ORTHO05D005978 4.8e-93 345.9 251 66.9
Potri.018G044100 Populus trichocarpa HOM05D005027 ORTHO05D005978 4.8e-93 345.9 277 60.6
arahy.Tifrunner.gnm1.ann1.4KPL6Q Arachis hypogaea HOM05D005027 ORTHO05D005978 6.3e-93 345.5 281 60.9
Gohir.A06G092800 Gossypium hirsutum HOM05D005027 ORTHO05D005978 6.3e-93 345.5 298 58.7
Medtr7g063800 Medicago truncatula HOM05D005027 ORTHO05D005978 8.2e-93 345.1 300 58.0
Sed0014536 Sechium edule HOM05D005027 ORTHO05D005978 1.4e-92 344.4 264 63.3
FAN27G2638 Fragaria x ananassa HOM05D005027 ORTHO05D005978 3.1e-92 343.2 288 60.8
Medtr3g109610 Medicago truncatula HOM05D005027 ORTHO05D005978 3.1e-92 343.2 240 68.3
MELO3C011142.2 Cucumis melo HOM05D005027 ORTHO05D005978 4.1e-92 342.8 273 62.3
Gohir.A07G022500 Gossypium hirsutum HOM05D005027 ORTHO05D005978 5.3e-92 342.4 243 66.3
Psat0s1928g0120 Pisum sativum HOM05D005027 ORTHO05D005978 5.3e-92 342.4 229 71.2
Potri.006G238500 Populus trichocarpa HOM05D005027 ORTHO05D005978 5.3e-92 342.4 243 68.3
CsaV3_2G030870 Cucumis sativus L. HOM05D005027 ORTHO05D005978 9.1e-92 341.7 258 63.2
Sabra06G0186600 Salix brachista HOM05D005027 ORTHO05D005978 9.1e-92 341.7 243 68.3
Ah.16g105780 Amaranthus hybridus HOM05D005027 ORTHO05D005978 1.2e-91 341.3 245 65.7
ClCG08G012240 Citrullus lanatus HOM05D005027 ORTHO05D005978 1.2e-91 341.3 259 63.3
arahy.Tifrunner.gnm1.ann1.MD1Q75 Arachis hypogaea HOM05D005027 ORTHO05D005978 1.6e-91 340.9 257 65.0
Gohir.D06G092400 Gossypium hirsutum HOM05D005027 ORTHO05D005978 1.6e-91 340.9 243 66.7
TAR624G0014 Trochodendron aralioides HOM05D005027 ORTHO05D005978 2.0e-91 340.5 243 67.5
TWI34G1114 Tripterygium wilfordii HOM05D005027 ORTHO05D005978 2.7e-91 340.1 244 66.4
HPP92_022983 Vanilla planifolia HOM05D005027 ORTHO05D005978 2.7e-91 340.1 247 66.0
Nn8g39130 Nelumbo nucifera HOM05D005027 ORTHO05D005978 3.5e-91 339.7 245 68.2
PGR044G2243 Punica granatum HOM05D005027 ORTHO05D005978 3.5e-91 339.7 245 65.7
Cc08_g09540 Coffea canephora HOM05D005027 ORTHO05D005978 4.5e-91 339.3 250 65.6
Gohir.D07G025900 Gossypium hirsutum HOM05D005027 ORTHO05D005978 4.5e-91 339.3 243 65.8
Gorai.001G027000 Gossypium raimondii HOM05D005027 ORTHO05D005978 4.5e-91 339.3 243 65.8
RcHm_v2.0_Chr6g0306201 Rosa chinensis HOM05D005027 ORTHO05D005978 4.5e-91 339.3 241 68.5
MD15G1093500 Malus domestica HOM05D005027 ORTHO05D005978 7.7e-91 338.6 243 66.3
FAN15G3195 Fragaria x ananassa HOM05D005027 ORTHO05D005978 1.0e-90 338.2 288 60.1
Gorai.010G106400 Gossypium raimondii HOM05D005027 ORTHO05D005978 1.0e-90 338.2 295 57.3
Lalb_Chr08g0243061 Lupinus albus HOM05D005027 ORTHO05D005978 1.0e-90 338.2 295 58.0
DCAR_004470 Daucus carota HOM05D005027 ORTHO05D005978 1.3e-90 337.8 263 62.4
Thecc.09G045100 Theobroma cacao HOM05D005027 ORTHO05D005978 1.3e-90 337.8 281 58.4
Duzib168G0183 Durio zibethinus HOM05D005027 ORTHO05D005978 2.2e-90 337.0 231 68.0
Eucgr.C02930 Eucalyptus grandis HOM05D005027 ORTHO05D005978 2.2e-90 337.0 254 65.7
Nitab4.5_0003794g0080 Nicotiana tabacum HOM05D005027 ORTHO05D005978 2.9e-90 336.7 242 65.7
Lj8A581T28 Lonicera japonica HOM05D005027 ORTHO05D005978 3.8e-90 336.3 276 62.3
Atru.chr3.767 Acer truncatum HOM05D005027 ORTHO05D005978 5.0e-90 335.9 264 61.7
Phvul.009G109700 Phaseolus vulgaris HOM05D005027 ORTHO05D005978 5.0e-90 335.9 228 68.0
Glyma.06G085800 Glycine max HOM05D005027 ORTHO05D005978 6.5e-90 335.5 272 60.3
Peaxi162Scf00227g00714 Petunia axillaris HOM05D005027 ORTHO05D005978 6.5e-90 335.5 255 64.3
VMungo1309G1842 Vigna mungo HOM05D005027 ORTHO05D005978 6.5e-90 335.5 268 61.2
Prupe.1G448400 Prunus persica HOM05D005027 ORTHO05D005978 1.1e-89 334.7 268 60.8
Sopen08g020520 Solanum pennellii HOM05D005027 ORTHO05D005978 1.5e-89 334.3 276 59.4
ECA248G1215 Erigeron canadensis HOM05D005027 ORTHO05D005978 1.9e-89 334.0 258 62.0
MD08G1113800 Malus domestica HOM05D005027 ORTHO05D005978 2.5e-89 333.6 245 64.5
Solyc08g066650.3 Solanum lycopersicum HOM05D005027 ORTHO05D005978 2.5e-89 333.6 276 59.8
Aqoxy7G01485 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 3.2e-89 333.2 243 67.9
Lj1g0019414 Lotus japonicus HOM05D005027 ORTHO05D005978 4.2e-89 332.8 260 62.7
Migut.A00205 Erythranthe guttata HOM05D005027 ORTHO05D005978 5.5e-89 332.4 282 58.9
PSO210G1252 Papaver somniferum HOM05D005027 ORTHO05D005978 5.5e-89 332.4 294 56.1
TWI63G0812 Tripterygium wilfordii HOM05D005027 ORTHO05D005978 7.2e-89 332.0 229 67.7
Rhsim02G0178400 Rhododendron simsii HOM05D005027 ORTHO05D005978 1.2e-88 331.3 253 61.3
SalBow4G2697 Salvia bowleyana HOM05D005027 ORTHO05D005978 1.2e-88 331.3 256 61.3
MBI04_g45212_MAGBIO Magnolia biondii HOM05D005027 ORTHO05D005978 1.6e-88 330.9 243 65.8
Nitab4.5_0001894g0040 Nicotiana tabacum HOM05D005027 ORTHO05D005978 2.1e-88 330.5 242 64.5
Oeu038805.1 Olea europaea HOM05D005027 ORTHO05D005978 2.1e-88 330.5 241 65.6
Glyma.04G084100 Glycine max HOM05D005027 ORTHO05D005978 3.6e-88 329.7 228 68.0
Oeu030720.1 Olea europaea HOM05D005027 ORTHO05D005978 6.1e-88 328.9 227 67.0
Ciclev10008050m.g Citrus clementina HOM05D005027 ORTHO05D005978 8.0e-88 328.6 247 63.2
HanXRQChr00c0025g0571121 Helianthus annuus HOM05D005027 ORTHO05D005978 8.0e-88 328.6 262 60.7
COL.COLO4_20969 Corchorus olitorius HOM05D005027 ORTHO05D005978 1.4e-87 327.8 229 65.5
Actinidia13335 Actinidia chinensis HOM05D005027 ORTHO05D005978 1.8e-87 327.4 242 65.3
unitig_46.g18188 Utricularia gibba HOM05D005027 ORTHO05D005978 4.0e-87 326.2 272 58.8
HanXRQChr02g0050571 Helianthus annuus HOM05D005027 ORTHO05D005978 5.2e-87 325.9 311 55.3
Zm00001eb153000 Zea mays HOM05D005027 ORTHO05D005978 5.2e-87 325.9 229 66.4
CAN.G552.8 Capsicum annuum HOM05D005027 ORTHO05D005978 1.2e-86 324.7 241 62.7
ECA233G5490 Erigeron canadensis HOM05D005027 ORTHO05D005978 1.2e-86 324.7 264 60.6
Aqoxy7G01484 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 1.5e-86 324.3 276 59.4
Sc09g0009280 Simmondsia chinensis HOM05D005027 ORTHO05D005978 1.5e-86 324.3 227 66.1
Os01g0746400 Oryza sativa ssp. japonica HOM05D005027 ORTHO05D005978 4.4e-86 322.8 228 66.7
Eucgr.C02932 Eucalyptus grandis HOM05D005027 ORTHO05D005978 7.5e-86 322.0 301 55.8
Lsat_1_v5_gn_1_46661 Lactuca sativa HOM05D005027 ORTHO05D005978 2.2e-85 320.5 239 63.6
Aqoxy7G01483 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.8e-85 320.1 254 62.2
Lsat_1_v5_gn_6_23181 Lactuca sativa HOM05D005027 ORTHO05D005978 1.1e-84 318.2 263 59.7
CDE08G1231 Ceratophyllum demersum HOM05D005027 ORTHO05D005978 2.4e-84 317.0 269 59.5
SEGI_19583 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 2.4e-84 317.0 257 61.1
vmacro11059 Vaccinium macrocarpon HOM05D005027 ORTHO05D005978 4.1e-84 316.2 224 67.0
EL10Ac2g04019 Beta vulgaris HOM05D005027 ORTHO05D005978 1.6e-83 314.3 243 62.1
Aqoxy1G03982 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.2e-82 310.5 243 62.6
ECA248G1482 Erigeron canadensis HOM05D005027 ORTHO05D005978 8.5e-82 308.5 260 59.2
Aqoxy1G03410 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.6e-78 297.0 252 57.5
Aqoxy3G01972 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 3.4e-78 296.6 293 52.9
SGA_v2.0_scaffold103G29990 Striga asiatica HOM05D005027 ORTHO05D005978 4.4e-78 296.2 221 65.2
AUR62009284 Chenopodium quinoa HOM05D005027 ORTHO05D005978 2.2e-77 293.9 202 67.8
CiPaw.07G204400 Carya illinoinensis HOM05D005027 ORTHO05D005978 3.1e-76 290.0 203 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4691 Anthoceros agrestis HOM05D005027 ORTHO05D005978 4.1e-76 289.7 229 58.5
Dinv23368 Davidia involucrata HOM05D005027 ORTHO05D005978 4.5e-75 286.2 218 63.8
Actinidia30277 Actinidia chinensis HOM05D005027 ORTHO05D005978 7.7e-75 285.4 210 65.2
ATR0723G015 Amborella trichopoda HOM05D005027 ORTHO05D005978 1.5e-73 281.2 249 56.6
CDE02G4197 Ceratophyllum demersum HOM05D005027 ORTHO05D005978 9.5e-73 278.5 243 58.8
Lj7A701T19 Lonicera japonica HOM05D005027 ORTHO05D005978 1.0e-71 275.0 203 67.0
Os01g0566500 Oryza sativa ssp. japonica HOM05D005027 ORTHO05D005978 3.4e-70 270.0 230 56.1
Pp3c6_21520 Physcomitrium patens HOM05D005027 ORTHO05D005978 9.8e-70 268.5 227 56.4
ATR0705G159 Amborella trichopoda HOM05D005027 ORTHO05D005978 4.6e-67 259.6 193 65.3
SMO147G0156 Selaginella moellendorffii HOM05D005027 ORTHO05D005978 5.0e-66 256.1 227 53.7
SEGI_00216 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 2.5e-65 253.8 299 45.8
AUR62039699 Chenopodium quinoa HOM05D005027 ORTHO05D005978 9.2e-52 208.8 202 53.5
AUR62044294 Chenopodium quinoa HOM05D005027 ORTHO05D005978 9.2e-52 208.8 202 53.5
TPR.G15106 Trifolium pratense HOM05D005027 ORTHO05D005978 1.9e-49 201.1 193 54.9
Dinv27900 Davidia involucrata HOM05D005027 ORTHO05D005978 1.5e-41 174.9 144 63.2
BolC1t00567H Brassica oleracea HOM05D005027 ORTHO05D005978 3.9e-34 150.2 74 89.2
Aqoxy3G01962 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 1.4e-31 141.7 109 61.5
PRCOL_00003714 Prasinoderma coloniale HOM05D005027 ORTHO05D005978 1.1e-28 132.1 258 31.0
Cre02.g073900 Chlamydomonas reinhardtii HOM05D005027 ORTHO05D005978 3.6e-24 117.1 262 32.8
Cre02.g073950 Chlamydomonas reinhardtii HOM05D005027 ORTHO05D005978 1.4e-12 78.6 177 32.2
Cre08.g365851 Chlamydomonas reinhardtii HOM05D005027 ORTHO05D005978 2.1e-11 74.7 79 46.8
SEGI_19892 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 6.0e-11 73.2 56 51.8
SEGI_39574 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 7.9e-11 72.8 56 51.8
SEGI_39055 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 6.7e-10 69.7 56 50.0
SEGI_33998 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 3.3e-09 67.4 56 51.8
AL1G44000 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 9.6e-09 65.9 226 28.3
BcaB07g32612 Brassica carinata HOM05D000433 ORTHO05D000443 3.7e-08 63.9 233 27.9
Cre12.g488350 Chlamydomonas reinhardtii HOM05D006089 ORTHO05D007345 3.7e-08 63.9 165 30.9
Sp1g25960 Schrenkiella parvula HOM05D000433 ORTHO05D000443 3.7e-08 63.9 233 27.9
Cpa.g.sc246.3 Carica papaya HOM05D000433 ORTHO05D000443 8.2e-08 62.8 231 26.8
Thhalv10007160m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 8.2e-08 62.8 245 27.3
AT1G30100 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 1.8e-07 61.6 226 26.5
BcaC05g27032 Brassica carinata HOM05D000433 ORTHO05D000443 2.4e-07 61.2 233 27.5
C05p28900 Brassica napus HOM05D000433 ORTHO05D000443 2.4e-07 61.2 233 27.5
BolC5t31611H Brassica oleracea HOM05D000433 ORTHO05D000443 2.4e-07 61.2 233 27.5
TAR375G0204 Trochodendron aralioides HOM05D006089 ORTHO05D007345 3.1e-07 60.8 181 30.4
TAR352G0004 Trochodendron aralioides HOM05D006089 ORTHO05D007345 4.1e-07 60.5 181 30.4
Carub.0001s2832 Capsella rubella HOM05D000433 ORTHO05D000443 5.3e-07 60.1 226 26.5
CARHR029310 Cardamine hirsuta HOM05D000433 ORTHO05D000443 5.3e-07 60.1 226 27.4
A09p36420 Brassica napus HOM05D000433 ORTHO05D000443 6.9e-07 59.7 233 27.0
BraA09t39165Z Brassica rapa HOM05D000433 ORTHO05D000443 6.9e-07 59.7 233 27.0
Aa31LG6G5570 Aethionema arabicum HOM05D000433 ORTHO05D000443 9.0e-07 59.3 232 27.2
TWI73G0344 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 9.0e-07 59.3 335 24.8
ECA234G3656 Erigeron canadensis HOM05D000433 ORTHO05D000443 1.2e-06 58.9 241 25.7
Gorai.010G166900 Gossypium raimondii HOM05D000433 ORTHO05D000443 1.2e-06 58.9 223 26.0
Solyc08g016720.1 Solanum lycopersicum HOM05D000433 ORTHO05D000443 1.2e-06 58.9 292 24.7
Sopen08g007150 Solanum pennellii HOM05D000433 ORTHO05D000443 1.2e-06 58.9 292 24.7
Gohir.D06G143100 Gossypium hirsutum HOM05D000433 ORTHO05D000443 1.5e-06 58.5 223 26.0
SMO165G0127 Selaginella moellendorffii HOM05D006089 ORTHO05D007345 1.5e-06 58.5 144 30.6
HPP92_026840 Vanilla planifolia HOM05D000433 ORTHO05D000443 2.0e-06 58.2 204 27.5
Haze_05615 Corylus avellana HOM05D000433 ORTHO05D000443 3.4e-06 57.4 225 27.6
Gohir.A06G137900 Gossypium hirsutum HOM05D000433 ORTHO05D000443 3.4e-06 57.4 223 26.0
Psat3g158440 Pisum sativum HOM05D006089 ORTHO05D007345 3.4e-06 57.4 178 27.5
CANSAT35G0817 Cannabis sativa HOM05D000433 ORTHO05D000443 5.9e-06 56.6 314 23.9
Cfa000934 Carpinus fangiana HOM05D000433 ORTHO05D000443 5.9e-06 56.6 232 25.4
DCAR_019639 Daucus carota HOM05D000433 ORTHO05D000443 1.0e-05 55.8 249 24.1
HanXRQChr04g0114331 Helianthus annuus HOM05D000433 ORTHO05D000443 1.0e-05 55.8 231 24.7
SEGI_10037 Sequoiadendron giganteum HOM05D006089 ORTHO05D007345 1.0e-05 55.8 146 27.4


User provided reference genes

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