Gene: AT1G30100
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G30100
- Transcript Identifier AT1G30100.1
- Gene Type Coding gene
- Location Chr1 : 10571383-10573152 : positive
Gene Family Information
- ID HOM05D000433
- #Genes/#Species 1194/98
- Phylogenetic origin
- ID ORTHO05D000443
- #Genes/#Species 921/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G30100.1
- symbol NCED5
- Alias ATNCED5,NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5
- uniprot Q9C6Z1
Descriptions
- Description nine-cis-epoxycarotenoid dioxygenase 5
- Computational description nine-cis-epoxycarotenoid dioxygenase 5 (NCED5); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 2 (TAIR:AT4G18350.1); Has 2882 Blast hits to 2845 proteins in 494 species: Archae - 16; Bacteria - 802; Metazoa - 232; Fungi - 202; Plants - 893; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009688 | IEA | GOA Database | abscisic acid biosynthetic process | |
| GO:0009688 | IMP TAS | Gene Ontology | abscisic acid biosynthetic process | 1 2 |
| GO:0016121 | IBA | Gene Ontology | carotene catabolic process | 3 |
| GO:0010162 | IGI | Gene Ontology | seed dormancy process | 4 |
| GO:0009414 | IGI | Gene Ontology | response to water deprivation | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045549 | IEA | GOA Database | 9-cis-epoxycarotenoid dioxygenase activity | |
| GO:0045549 | TAS | Gene Ontology | 9-cis-epoxycarotenoid dioxygenase activity | 1 |
| GO:0016702 | IEA | GOA Database | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
| GO:0016702 | IEA | InterPro | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
| GO:0016491 | IEA | GOA Database | oxidoreductase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0051213 | IEA | GOA Database | dioxygenase activity | |
| GO:0010436 | IBA | Gene Ontology | carotenoid dioxygenase activity | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009579 | IEA | GOA Database | thylakoid | |
| GO:0009579 | IDA | Gene Ontology | thylakoid | 1 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0009507 | IEA | GOA Database | chloroplast | |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009535 | IEA | GOA Database | chloroplast thylakoid membrane | |
| GO:0009570 | IBA | Gene Ontology | chloroplast stroma | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004294 | Carotenoid oxygenase |
| Mapman id | Description |
|---|---|
| 11.1.1.4 | Phytohormone action.abscisic acid.biosynthesis.neoxanthin cleavage protein |