Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 1.1e-240 836.3 429 100.0
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 2.7e-239 831.6 429 99.3
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 1.5e-234 815.8 432 97.2
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 1.9e-229 798.9 433 96.3
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 2.9e-225 785.0 458 91.0
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 2.1e-220 768.8 433 92.1
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 9.0e-203 710.3 436 84.6
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 1.7e-201 706.1 437 84.0
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 1.6e-199 699.5 433 82.7
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 3.5e-199 698.4 432 82.4
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 1.8e-198 696.0 433 81.8
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 2.8e-196 688.7 433 81.8
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 1.2e-178 630.2 440 74.3
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 1.0e-150 537.3 463 62.2
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 2.4e-115 419.9 476 48.9
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 1.9e-107 393.7 469 48.0
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 9.2e-107 391.3 480 48.3
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 2.1e-106 390.2 452 50.4
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 1.0e-105 387.9 474 47.3
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 5.6e-104 382.1 465 47.1
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 7.3e-104 381.7 481 47.2
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 1.3e-103 380.9 461 47.5
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 1.4e-102 377.5 451 47.7
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 1.8e-102 377.1 472 47.7
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 5.3e-102 375.6 474 47.3
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 1.5e-101 374.0 461 46.2
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 7.6e-101 371.7 467 45.8
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 8.4e-100 368.2 468 46.4
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 5.4e-99 365.5 462 46.8
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 2.7e-98 363.2 462 45.9
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 6.0e-98 362.1 460 45.0
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 1.7e-97 360.5 456 45.4
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.1e-96 357.8 470 45.1
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 2.5e-96 356.7 460 45.4
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.3e-96 356.3 471 45.2
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 1.3e-95 354.4 428 46.3
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 8.1e-95 351.7 456 46.3
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 3.1e-94 349.7 470 43.4
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 4.0e-94 349.4 456 43.2
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 5.3e-94 349.0 484 43.8
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 1.2e-93 347.8 460 43.9
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 4.5e-93 345.9 456 43.0
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 1.3e-92 344.4 461 44.0
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.7e-92 344.0 462 45.0
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 3.5e-90 336.3 466 42.7
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 1.3e-89 334.3 446 44.8
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.8e-89 334.0 449 45.4
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 5.1e-89 332.4 436 43.3
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 1.5e-88 330.9 484 41.7
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 3.3e-88 329.7 469 42.9
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 8.1e-87 325.1 464 42.7
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 1.4e-86 324.3 485 40.2
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 1.2e-85 321.2 461 42.5
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 1.5e-85 320.9 466 40.3
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 1.5e-85 320.9 454 41.9
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 1.5e-85 320.9 477 41.1
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 5.8e-85 318.9 467 42.2
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 1.0e-84 318.2 485 39.2
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 2.2e-84 317.0 405 46.2
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 4.9e-84 315.8 465 41.3
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 1.3e-81 307.8 482 40.5
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 1.8e-81 307.4 444 40.5
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 1.9e-80 303.9 419 43.2
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 2.5e-80 303.5 459 40.1
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 4.3e-80 302.8 436 43.1
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 9.6e-80 301.6 463 41.5
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 9.6e-80 301.6 476 39.9
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 2.8e-79 300.1 467 40.0
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 6.2e-79 298.9 434 42.6
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 1.4e-78 297.7 457 39.8
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 3.1e-78 296.6 439 41.7
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 4.0e-78 296.2 437 43.2
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 5.3e-78 295.8 442 41.9
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 9.0e-78 295.0 410 41.5
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 4.5e-77 292.7 478 40.6
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 1.7e-76 290.8 460 38.7
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 2.2e-76 290.4 463 40.0
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 2.9e-76 290.0 466 38.8
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 6.5e-76 288.9 469 39.7
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 1.1e-75 288.1 464 39.9
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 1.6e-74 284.3 468 40.8
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 2.1e-74 283.9 450 37.8
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 3.5e-74 283.1 413 40.9
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 7.9e-74 282.0 431 39.9
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 1.3e-73 281.2 340 46.8
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 2.3e-73 280.4 339 47.8
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 3.0e-73 280.0 468 37.0
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 8.7e-73 278.5 462 40.7
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.9e-72 277.3 443 39.5
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 4.3e-72 276.2 336 46.4
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 9.7e-72 275.0 451 37.0
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 1.5e-61 241.1 436 35.3
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 1.7e-60 237.7 453 37.1
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 1.4e-57 228.0 303 45.5
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 2.0e-56 224.2 304 42.8
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 2.4e-54 217.2 432 35.0
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 7.2e-51 205.7 330 40.3
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 3.6e-50 203.4 321 41.4
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 1.7e-36 157.9 349 33.5
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 1.1e-35 155.2 182 45.6
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 6.6e-28 129.4 214 39.7
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 2.8e-26 124.0 140 50.0
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 6.1e-26 122.9 120 55.0
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 5.2e-25 119.8 120 54.2
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 5.2e-25 119.8 120 54.2
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.0e-20 105.5 120 50.8
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.9e-19 101.3 129 50.4
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 5.6e-19 99.8 193 36.3
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 8.0e-18 95.9 479 24.2
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 6.8e-17 92.8 79 57.0
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 1.2e-16 92.0 162 35.8
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 1.2e-16 92.0 162 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 9.8e-16 89.0 446 22.9
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 1.3e-15 88.6 74 59.5
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 2.9e-15 87.4 123 39.0
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 4.9e-15 86.7 252 31.3
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 5.2e-09 66.6 121 33.9
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 3.4e-08 63.9 55 54.5
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 9.8e-08 62.4 78 39.7
SEGI_26564 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 7.1e-06 56.2 114 30.7


User provided reference genes

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