Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 4.3e-77 291.2 143 100.0
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 4.3e-77 291.2 143 100.0
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 4.3e-77 291.2 143 100.0
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 3.0e-70 268.5 145 92.4
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 3.0e-70 268.5 145 92.4
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.0e-66 255.8 143 90.9
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.7e-63 245.4 153 85.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 1.4e-62 243.0 145 84.1
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 6.7e-62 240.7 143 84.6
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.7e-61 237.7 145 84.1
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.9e-56 222.6 149 76.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.4e-51 206.5 152 69.7
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 7.7e-50 200.7 145 70.3
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 2.5e-48 195.7 150 66.7
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 4.2e-48 194.9 143 67.8
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 8.0e-47 190.7 143 65.0
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-46 189.9 142 69.7
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-45 186.8 143 65.7
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.2e-45 186.8 143 65.7
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.0e-45 186.0 140 69.3
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 4.4e-45 184.9 144 68.1
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 7.5e-45 184.1 147 65.3
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.3e-44 183.3 141 66.0
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.7e-44 183.0 146 64.4
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.7e-44 183.0 140 66.4
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 2.2e-44 182.6 144 67.4
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.2e-44 182.6 148 66.2
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 2.8e-44 182.2 142 65.5
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.7e-44 181.8 140 66.4
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 8.3e-44 180.6 139 65.5
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.4e-43 179.1 137 63.5
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 3.1e-43 178.7 140 67.1
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 3.1e-43 178.7 146 64.4
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 4.1e-43 178.3 141 68.1
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 7.0e-43 177.6 146 63.7
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 7.0e-43 177.6 136 66.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 7.0e-43 177.6 144 66.7
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.0e-43 177.6 144 66.7
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.0e-43 177.6 143 67.1
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.6e-42 176.4 140 65.0
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.6e-42 176.4 150 62.7
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 1.6e-42 176.4 142 65.5
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.6e-42 176.4 141 64.5
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 2.0e-42 176.0 143 63.6
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.0e-42 176.0 143 66.4
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 2.0e-42 176.0 138 63.0
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.7e-42 175.6 139 63.3
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 4.5e-42 174.9 139 61.9
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 5.9e-42 174.5 139 62.6
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 7.7e-42 174.1 145 61.4
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 1.0e-41 173.7 145 63.4
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.0e-41 173.7 137 65.7
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 1.3e-41 173.3 147 63.3
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.3e-41 173.3 139 67.6
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 2.9e-41 172.2 145 58.6
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.8e-41 171.8 136 66.9
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 6.5e-41 171.0 150 59.3
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.6e-41 170.6 141 61.0
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 8.6e-41 170.6 144 61.8
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 8.6e-41 170.6 140 65.0
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.5e-40 169.9 141 63.1
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.5e-40 169.9 141 61.7
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.5e-40 169.9 140 63.6
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 1.5e-40 169.9 142 62.7
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.9e-40 169.5 142 62.0
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.9e-40 169.5 144 61.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.5e-40 169.1 142 61.3
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.3e-40 168.7 142 62.0
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 4.2e-40 168.3 144 61.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 4.2e-40 168.3 133 63.2
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 5.5e-40 167.9 143 60.8
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 5.5e-40 167.9 138 63.0
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 9.5e-40 167.2 139 64.0
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 9.5e-40 167.2 142 59.2
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 9.5e-40 167.2 143 62.2
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.6e-39 166.4 141 63.1
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.6e-39 166.4 138 63.0
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.8e-39 165.6 144 60.4
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 3.6e-39 165.2 139 60.4
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 4.7e-39 164.9 145 58.6
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 6.1e-39 164.5 140 60.7
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 6.1e-39 164.5 142 59.2
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 6.1e-39 164.5 137 60.6
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.0e-38 163.7 136 63.2
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.0e-38 163.7 144 61.1
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 2.3e-38 162.5 140 60.7
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 3.0e-38 162.2 144 58.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.0e-38 161.8 142 60.6
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.0e-38 161.8 144 59.0
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 5.2e-38 161.4 143 58.7
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 5.2e-38 161.4 143 58.7
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 8.9e-38 160.6 141 60.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 8.9e-38 160.6 137 62.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.5e-37 159.8 136 62.5
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 4.4e-37 158.3 115 68.7
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 4.4e-37 158.3 136 61.8
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.3e-36 156.8 140 60.0
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-36 156.8 141 60.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.7e-36 155.2 116 68.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.7e-36 155.2 116 68.1
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.7e-36 155.2 138 58.0
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 8.3e-36 154.1 165 52.7
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.8e-35 152.9 137 60.6
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 1.7e-33 146.4 159 54.7
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 3.9e-25 118.6 146 42.5
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 4.7e-23 111.7 179 40.2
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.8e-22 109.8 118 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.2e-21 107.1 150 44.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 2.7e-18 95.9 130 40.8
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.8e-14 83.2 66 63.6
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.7e-09 66.6 62 59.7
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.1e-08 63.9 58 55.2
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 6.2e-07 58.2 57 54.4
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.1e-07 57.8 35 77.1


User provided reference genes

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