Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 0.0e+00 1307.0 946 100.0
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 0.0e+00 1285.4 952 98.6
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 0.0e+00 1283.1 952 98.4
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 0.0e+00 1282.7 952 98.4
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 0.0e+00 1272.7 952 98.1
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 0.0e+00 1218.8 957 92.7
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 0.0e+00 1167.5 958 89.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 0.0e+00 1079.3 957 82.7
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 3.2e-301 1038.5 954 82.0
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.3e-297 1026.5 956 80.4
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 3.8e-294 1015.0 955 79.9
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 3.1e-288 995.3 953 78.7
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.5e-282 976.5 933 81.0
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.4e-280 969.9 938 73.8
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.1e-280 968.8 931 80.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 3.9e-259 898.7 935 75.6
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 3.6e-252 875.5 936 74.6
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.3e-251 872.8 937 73.6
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 3.7e-249 865.5 934 72.9
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 9.1e-248 860.9 966 68.9
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 3.5e-247 859.0 952 72.4
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.5e-247 858.6 933 73.0
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 7.7e-247 857.8 933 73.1
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 5.0e-246 855.1 940 72.8
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 1.9e-245 853.2 938 73.0
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 4.2e-245 852.0 940 70.7
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 1.2e-244 850.5 936 73.0
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 2.1e-244 849.7 954 71.6
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 2.7e-244 849.4 953 72.0
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 6.7e-243 844.7 942 71.9
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 6.7e-243 844.7 935 71.7
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.5e-242 841.3 951 71.6
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 8.2e-241 837.8 954 71.1
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 1.1e-240 837.4 952 72.0
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 9.1e-240 834.3 935 71.0
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.0e-238 830.9 952 61.0
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 1.7e-238 830.1 940 71.4
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 6.5e-238 828.2 950 60.8
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 8.5e-238 827.8 943 72.9
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 8.5e-238 827.8 941 72.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 5.5e-237 825.1 988 56.2
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 2.3e-235 819.7 935 71.9
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 2.3e-235 819.7 933 71.5
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.5e-234 817.0 929 68.4
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 9.8e-234 814.3 942 71.7
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.7e-233 813.5 959 68.5
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.8e-233 812.8 951 70.8
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 2.8e-233 812.8 955 70.4
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 4.8e-233 812.0 959 70.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.4e-232 809.7 927 70.1
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.1e-232 809.3 965 66.6
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 4.1e-232 808.9 942 71.1
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 2.7e-231 806.2 942 72.6
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.5e-231 805.4 956 70.7
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.7e-230 803.5 952 70.0
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.9e-230 802.7 934 70.4
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 5.0e-230 802.0 943 71.6
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 6.5e-230 801.6 942 71.4
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 8.5e-230 801.2 949 69.5
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.9e-229 800.0 942 71.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 2.5e-229 799.7 942 67.8
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 2.1e-228 796.6 940 69.9
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 3.6e-228 795.8 935 69.7
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 4.7e-228 795.4 929 68.5
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 8.0e-228 794.7 949 70.3
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.0e-227 794.3 956 70.2
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 2.3e-227 793.1 959 68.1
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.2e-226 790.8 948 69.4
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 1.3e-225 787.3 944 69.7
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 2.8e-225 786.2 948 69.0
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.3e-225 785.0 959 67.9
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 6.3e-225 785.0 956 69.8
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 2.4e-224 783.1 959 67.9
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.4e-224 783.1 959 67.9
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 3.1e-224 782.7 953 68.9
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 5.4e-224 781.9 1129 61.5
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 7.0e-224 781.6 973 56.5
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.5e-223 778.9 959 67.7
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 5.0e-222 775.4 949 68.6
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 6.6e-222 775.0 984 67.2
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.6e-222 774.6 964 67.6
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 1.1e-221 774.2 958 69.0
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 2.5e-221 773.1 964 66.1
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 6.1e-220 768.5 965 66.3
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.2e-217 760.0 945 59.7
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.8e-216 756.9 949 68.5
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 8.6e-214 748.0 945 60.2
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 6.8e-211 738.4 956 46.7
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.7e-207 726.5 943 68.0
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 3.5e-207 726.1 946 56.2
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 4.6e-207 725.7 733 68.9
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.1e-205 721.1 953 66.8
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.6e-204 716.1 952 66.2
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 9.8e-202 708.0 937 66.7
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 3.9e-198 696.0 924 64.9
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 3.6e-196 689.5 818 74.0
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.2e-196 688.7 884 67.8
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.6e-194 683.3 935 62.9
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 5.8e-194 682.2 942 61.3
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 3.3e-189 666.4 1023 56.7
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 9.9e-186 654.8 852 68.7
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.8e-179 634.0 938 61.8
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 2.5e-173 613.6 919 59.1
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 4.6e-167 592.8 862 62.4
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 4.6e-159 566.2 698 61.6
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 6.7e-158 562.4 924 58.1
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.9e-155 552.4 949 54.3
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.9e-155 552.4 949 54.3
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 1.3e-153 548.1 923 56.7
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 8.5e-153 545.4 970 57.9
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 3.6e-151 540.0 936 56.8
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 3.4e-117 427.2 645 43.4
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 6.8e-102 376.3 957 48.5
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.7e-101 373.2 598 56.7
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 8.6e-97 359.4 950 42.4
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.4e-91 342.0 283 67.8
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 6.8e-86 323.2 582 37.6
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 3.6e-71 274.2 726 42.4
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 2.9e-44 184.9 135 69.6
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.9e-41 174.5 183 50.8
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 8.7e-41 173.3 126 69.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.0e-36 159.8 122 65.6
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 3.9e-33 147.9 114 63.2
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-31 142.9 123 54.5
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 8.2e-31 140.2 112 59.8
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.7e-28 132.5 188 41.5
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 4.4e-24 117.9 122 54.9
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 4.8e-23 114.4 84 67.9
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 2.6e-21 108.6 77 74.0
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 7.4e-16 90.5 85 54.1
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.2e-15 89.0 86 52.3
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.4e-14 85.5 68 58.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.6e-13 82.0 62 62.9
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 4.5e-13 81.3 77 57.1
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.5e-11 74.3 82 45.1
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.2e-11 73.9 49 69.4
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 3.6e-10 71.6 51 66.7
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 1.3e-07 63.2 172 27.9
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 1.7e-07 62.8 172 29.1
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 2.8e-07 62.0 145 24.1
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 6.3e-07 60.8 172 27.9
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 6.3e-07 60.8 50 56.0
SEGI_39812 Sequoiadendron giganteum HOM05D000526 ORTHO05D000956 8.2e-07 60.5 159 25.2
ATR0157G001 Amborella trichopoda HOM05D000526 ORTHO05D000956 1.1e-06 60.1 156 25.6
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 1.1e-06 60.1 172 27.3
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 1.1e-06 60.1 172 27.3
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 1.4e-06 59.7 174 27.6
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.8e-06 59.3 45 62.2
AUR62038818 Chenopodium quinoa HOM05D005151 ORTHO05D006322 1.8e-06 59.3 172 26.7
Medtr3g051690 Medicago truncatula HOM05D000526 ORTHO05D000956 1.8e-06 59.3 149 26.8
SEGI_01490 Sequoiadendron giganteum HOM05D000526 ORTHO05D000956 1.8e-06 59.3 162 25.3
AUR62041890 Chenopodium quinoa HOM05D005151 ORTHO05D006322 2.4e-06 58.9 172 26.2
Phvul.002G037700 Phaseolus vulgaris HOM05D000526 ORTHO05D000956 2.4e-06 58.9 160 25.6
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 3.1e-06 58.5 208 26.9
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 3.1e-06 58.5 172 25.6
EL10Ac2g02619 Beta vulgaris HOM05D005151 ORTHO05D006322 4.1e-06 58.2 188 25.5
QL10p018959 Quercus lobata HOM05D000526 ORTHO05D000956 4.1e-06 58.2 149 25.5
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 5.3e-06 57.8 172 26.7
HPP92_015469 Vanilla planifolia HOM05D000526 ORTHO05D000956 5.3e-06 57.8 163 25.2
ATR0100G036 Amborella trichopoda HOM05D000526 ORTHO05D000956 7.0e-06 57.4 166 22.9
Carub.0005s1067 Capsella rubella HOM05D000526 ORTHO05D000956 7.0e-06 57.4 147 27.2
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 7.0e-06 57.4 80 41.2
HPP92_016030 Vanilla planifolia HOM05D000526 ORTHO05D000956 7.0e-06 57.4 163 23.9
ATR0829G009 Amborella trichopoda HOM05D000526 ORTHO05D000956 9.1e-06 57.0 166 22.9
Migut.L01534 Erythranthe guttata HOM05D005151 ORTHO05D006322 9.1e-06 57.0 178 25.8
Potri.006G145800 Populus trichocarpa HOM05D005151 ORTHO05D006322 9.1e-06 57.0 173 28.9
THA.LOC104820014 Tarenaya hassleriana HOM05D005151 ORTHO05D006322 9.1e-06 57.0 180 27.2
TAR624G0089 Trochodendron aralioides HOM05D005151 ORTHO05D006322 9.1e-06 57.0 188 28.2
VMungo1215G0045 Vigna mungo HOM05D000526 ORTHO05D000956 9.1e-06 57.0 160 25.6


User provided reference genes

Program Settings