Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1372.5 676 100.0
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1369.8 676 99.7
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 0.0e+00 1365.9 676 99.6
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 0.0e+00 1352.4 676 98.4
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1350.1 676 98.2
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1335.1 676 97.0
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 0.0e+00 1295.0 676 93.5
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 0.0e+00 1282.3 679 92.9
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 0.0e+00 1278.8 678 93.4
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 0.0e+00 1269.6 678 91.9
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 0.0e+00 1261.1 678 90.7
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 0.0e+00 1217.6 676 88.9
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 0.0e+00 1178.3 678 84.5
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 0.0e+00 1144.4 673 82.3
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 3.1e-290 1001.5 680 73.4
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 3.8e-288 994.6 683 73.4
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.4e-287 992.6 683 72.3
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 2.1e-286 988.8 621 77.0
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 2.7e-286 988.4 681 74.0
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 4.0e-282 974.5 641 73.8
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 4.0e-282 974.5 669 72.3
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 3.8e-280 968.0 667 71.5
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 4.9e-280 967.6 678 71.1
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 8.4e-280 966.8 629 74.1
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 7.1e-279 963.8 680 71.3
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 1.6e-278 962.6 686 71.1
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 2.1e-278 962.2 684 71.3
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 5.1e-277 957.6 677 70.9
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 4.3e-276 954.5 681 71.4
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 1.5e-273 946.0 682 69.9
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 1.4e-271 939.5 669 69.8
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 9.3e-271 936.8 684 69.2
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 2.7e-270 935.3 685 69.2
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 1.3e-269 932.9 632 73.1
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 8.7e-269 930.2 626 73.0
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 8.7e-269 930.2 671 68.7
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 2.5e-268 928.7 676 68.6
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 4.3e-268 927.9 681 69.6
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 5.6e-268 927.5 671 68.4
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 1.3e-267 926.4 678 69.5
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 4.8e-267 924.5 663 69.1
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 8.2e-267 923.7 684 69.2
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.8e-266 922.5 681 69.5
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 2.4e-266 922.2 675 69.2
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 2.4e-266 922.2 639 71.0
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.1e-266 921.8 671 68.1
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 5.3e-266 921.0 619 72.9
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 1.2e-265 919.8 614 72.8
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 2.0e-265 919.1 633 70.3
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 3.4e-265 918.3 666 69.4
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 3.4e-265 918.3 677 70.5
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.5e-265 917.9 627 71.3
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.5e-265 917.9 615 72.4
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 4.9e-264 914.4 676 67.6
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 6.5e-264 914.1 682 66.6
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 4.2e-263 911.4 669 68.8
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 7.1e-263 910.6 630 70.2
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 2.1e-262 909.1 608 72.0
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 2.7e-262 908.7 608 71.7
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 1.0e-261 906.7 680 68.2
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 8.7e-261 903.7 649 71.0
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 1.5e-260 902.9 678 68.6
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 2.8e-259 898.7 654 69.7
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 6.3e-259 897.5 630 70.2
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 8.2e-259 897.1 654 69.3
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 3.1e-258 895.2 630 72.1
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 1.2e-257 893.3 607 71.3
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 2.0e-257 892.5 630 72.1
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 2.6e-257 892.1 630 72.1
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.4e-255 886.3 690 64.8
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 4.2e-255 884.8 646 67.8
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 9.4e-255 883.6 679 66.3
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 1.2e-254 883.2 637 67.8
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 1.2e-254 883.2 671 67.7
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 1.4e-253 879.8 684 65.6
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 3.0e-253 878.6 586 71.8
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 1.1e-252 876.7 669 67.0
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 4.8e-251 871.3 686 66.2
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 3.4e-249 865.1 667 64.9
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 3.9e-245 851.7 626 66.6
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.6e-241 839.0 630 66.7
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 6.3e-235 817.8 634 65.5
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.8e-229 799.7 555 73.2
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 8.8e-229 797.3 658 63.2
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.7e-227 793.1 648 62.3
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.7e-227 793.1 585 65.1
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 2.2e-227 792.7 555 72.6
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 6.3e-227 791.2 797 54.5
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 2.2e-224 782.7 555 69.5
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 8.5e-224 780.8 556 71.4
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 1.4e-221 773.5 776 55.2
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 4.2e-215 751.9 670 59.9
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 2.8e-211 739.2 597 64.8
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.2e-196 690.6 574 59.2
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 6.0e-193 678.3 467 70.7
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 1.3e-184 650.6 787 48.9
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 1.1e-162 577.8 431 65.9
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 2.8e-142 510.0 452 57.3
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 4.3e-135 486.1 371 66.0
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.1e-122 444.9 531 47.1
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 1.9e-114 417.5 637 41.0
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 4.2e-106 389.8 284 69.0
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.2e-105 388.3 345 58.6
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.4e-96 358.2 326 58.6
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.4e-96 358.2 326 58.6
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 1.8e-96 357.8 294 62.2
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 2.7e-84 317.4 561 36.9
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 7.1e-77 292.7 241 59.8
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 1.2e-73 282.0 235 62.6
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 1.0e-59 235.7 570 30.5
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.7e-52 211.1 246 52.0
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.0e-51 209.1 256 45.7
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 5.3e-40 170.2 184 49.5
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 6.3e-33 146.7 142 53.5
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.1e-32 146.0 124 56.5
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.0e-32 142.9 140 54.3
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 2.8e-09 68.2 120 36.7


User provided reference genes

Program Settings