Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 2.8e-149 531.9 271 100.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 4.8e-109 398.3 308 74.0
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.4e-108 396.7 313 73.2
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.0e-103 380.6 311 70.7
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 9.7e-102 374.0 305 68.9
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 1.6e-101 373.2 308 69.2
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 8.2e-101 370.9 310 68.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-100 369.8 310 68.1
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 4.1e-100 368.6 309 69.6
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.7e-98 363.2 307 68.1
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.5e-97 359.4 306 67.3
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 2.3e-95 352.8 311 67.8
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.2e-91 340.5 304 66.1
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 5.9e-91 338.2 308 65.9
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 8.8e-79 297.7 314 58.3
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 3.3e-78 295.8 218 76.1
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 9.7e-78 294.3 270 65.2
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.5e-73 279.6 205 76.1
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-69 266.9 198 75.3
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-67 260.4 218 70.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.5e-67 259.2 304 51.6
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.8e-66 255.8 319 51.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 8.5e-66 254.6 314 52.5
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 1.0e-63 247.7 216 62.5
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.3e-63 246.5 324 51.5
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 2.0e-62 243.4 306 50.7
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.7e-62 241.9 306 50.0
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 7.5e-62 241.5 294 51.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 9.8e-62 241.1 294 51.0
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 9.8e-62 241.1 216 62.5
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-61 240.7 305 48.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.2e-61 240.0 219 60.3
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 4.8e-61 238.8 322 50.3
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 6.3e-61 238.4 219 61.2
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 8.3e-61 238.0 218 61.0
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.1e-60 237.7 221 59.3
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.1e-60 237.7 295 50.5
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.4e-60 237.3 304 51.3
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.4e-60 236.5 208 63.0
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 4.1e-60 235.7 313 50.8
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 5.4e-60 235.3 222 58.6
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 7.0e-60 235.0 219 59.8
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.6e-59 233.8 307 51.5
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.7e-59 233.0 305 50.5
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.7e-59 233.0 305 47.2
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 3.5e-59 232.6 191 70.2
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 3.5e-59 232.6 191 70.2
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 3.5e-59 232.6 307 50.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 5.9e-59 231.9 330 48.5
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 5.9e-59 231.9 302 49.3
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.0e-58 231.1 313 48.9
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.3e-58 230.7 268 53.7
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.3e-58 230.7 302 48.0
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.3e-58 229.9 220 60.9
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.8e-58 229.2 218 59.6
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 5.0e-58 228.8 220 59.5
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 2.5e-57 226.5 227 56.8
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.5e-57 226.5 225 57.3
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.2e-56 224.2 221 55.7
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.6e-56 223.8 273 49.5
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.8e-56 223.0 223 56.5
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 6.1e-56 221.9 213 58.2
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 8.0e-56 221.5 292 48.6
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 8.0e-56 221.5 217 59.0
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.0e-55 221.1 208 59.6
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.0e-55 221.1 217 56.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.8e-55 220.3 224 55.8
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 3.0e-55 219.5 284 48.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.0e-55 219.5 210 57.6
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.0e-55 219.2 218 55.5
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 4.0e-55 219.2 312 46.2
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 4.0e-55 219.2 292 49.3
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 5.2e-55 218.8 219 54.8
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.2e-55 218.8 218 55.5
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 5.2e-55 218.8 222 54.5
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.8e-55 218.4 224 57.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 6.8e-55 218.4 273 48.4
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 6.8e-55 218.4 306 47.1
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 8.9e-55 218.0 210 56.7
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 8.9e-55 218.0 291 49.1
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.0e-54 216.9 225 55.6
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 2.0e-54 216.9 220 55.0
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.6e-54 216.5 299 46.2
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.4e-54 216.1 218 57.3
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 9.8e-54 214.5 206 58.3
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 2.2e-53 213.4 205 58.0
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.8e-53 213.0 218 56.4
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 8.3e-53 211.5 230 52.2
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.8e-52 210.3 210 54.8
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 2.4e-52 209.9 218 55.0
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.1e-52 209.1 215 55.3
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.6e-51 207.2 229 53.7
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.6e-51 207.2 291 47.4
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 2.0e-51 206.8 308 46.1
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.7e-51 206.5 310 45.2
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.5e-51 206.1 244 53.3
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 3.5e-51 206.1 215 54.9
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 4.5e-51 205.7 311 44.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 7.8e-51 204.9 155 74.2
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 2.3e-50 203.4 256 50.4
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.9e-49 200.3 208 53.4
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.1e-48 195.3 218 50.9
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.0e-47 194.5 229 50.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 8.9e-47 191.4 258 46.5
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.2e-45 186.8 159 60.4
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 5.4e-44 182.2 233 47.2
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 9.2e-44 181.4 235 46.8
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.6e-43 179.1 154 66.2
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.6e-43 179.1 200 52.5
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 3.6e-40 169.5 220 46.8
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.7e-37 160.6 276 39.5
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.6e-35 154.1 211 42.7
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.5e-35 152.9 149 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 2.5e-33 146.7 244 39.3
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.6e-32 144.1 198 44.9
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 1.1e-31 141.4 205 41.5
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 3.1e-31 139.8 106 72.6
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 3.1e-31 139.8 211 41.7
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.2e-31 139.0 200 45.0
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 3.2e-28 129.8 142 54.9
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 4.1e-28 129.4 71 94.4
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 2.1e-27 127.1 199 38.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 6.6e-26 122.1 163 47.2
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.6e-26 121.7 109 59.6
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.9e-21 106.7 134 47.0
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.8e-21 106.3 140 47.1
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.8e-16 90.1 58 75.9
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 4.4e-14 82.8 199 34.2
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.4e-14 82.8 76 55.3
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.1e-12 78.2 221 30.3
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 6.6e-10 68.9 64 57.8
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.3e-08 64.7 185 28.6
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.4e-07 60.5 58 55.2
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 3.1e-07 60.1 69 53.6


User provided reference genes

Program Settings