Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 6.3e-282 973.4 474 100.0
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 7.0e-281 969.9 474 99.6
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 1.9e-270 935.3 475 96.4
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 1.7e-266 922.2 475 94.9
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.4e-260 902.5 482 92.1
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 5.4e-233 810.8 474 81.2
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 4.6e-232 807.7 505 80.4
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 4.6e-232 807.7 475 83.6
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 1.0e-231 806.6 474 81.2
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 2.5e-230 802.0 476 81.1
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 1.3e-226 789.6 459 82.8
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 2.2e-226 788.9 470 80.2
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 3.0e-207 725.3 476 73.7
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 9.1e-172 607.4 470 63.8
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 7.3e-129 464.9 459 51.9
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 5.8e-126 455.3 465 52.7
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 1.1e-124 451.1 465 50.8
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 7.8e-123 444.9 458 50.2
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 4.3e-121 439.1 449 51.7
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 7.3e-121 438.3 467 49.5
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 2.8e-120 436.4 485 49.1
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 5.2e-119 432.2 490 48.2
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.8e-119 431.8 480 48.3
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 5.8e-118 428.7 480 49.6
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 1.1e-116 424.5 468 48.3
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 6.0e-115 418.7 444 48.4
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 7.8e-115 418.3 468 48.3
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 3.3e-113 412.9 457 48.8
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 3.6e-112 409.5 464 46.8
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 3.2e-108 396.4 465 46.0
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 7.8e-107 391.7 459 45.8
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 7.8e-107 391.7 472 47.7
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 3.9e-106 389.4 465 47.7
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 6.6e-106 388.7 468 47.6
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 3.3e-105 386.3 465 47.5
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 6.2e-104 382.1 469 46.1
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 6.2e-104 382.1 456 41.9
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 6.9e-103 378.6 464 44.2
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 6.9e-103 378.6 482 44.8
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 1.2e-102 377.9 447 47.9
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 2.6e-102 376.7 464 46.8
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 4.2e-100 369.4 474 44.1
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 5.1e-98 362.5 478 42.5
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 6.6e-98 362.1 491 42.6
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 4.8e-96 355.9 333 53.2
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 1.4e-95 354.4 482 41.9
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 3.1e-95 353.2 464 45.0
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 3.1e-95 353.2 333 52.9
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 1.2e-94 351.3 481 43.7
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 6.4e-93 345.5 497 40.6
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 4.6e-91 339.3 480 41.2
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 1.8e-90 337.4 368 49.5
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.9e-89 334.0 330 51.2
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 4.0e-87 326.2 472 42.6
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 6.9e-87 325.5 461 40.1
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 9.0e-87 325.1 480 41.0
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 2.0e-86 323.9 339 49.9
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 2.2e-85 320.5 473 40.8
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 6.0e-83 312.4 536 36.0
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 6.0e-83 312.4 465 40.4
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 1.8e-82 310.8 361 47.1
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 3.3e-81 306.6 478 38.3
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 1.4e-79 301.2 346 47.1
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 1.8e-79 300.8 474 39.9
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 1.5e-78 297.7 471 38.4
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 4.9e-77 292.7 474 37.6
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 8.4e-77 292.0 464 39.9
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 8.4e-77 292.0 421 40.9
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 9.7e-73 278.5 470 37.4
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 1.8e-71 274.2 351 42.7
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 5.9e-70 269.2 429 37.5
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 6.9e-63 245.7 465 36.3
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 6.5e-61 239.2 381 37.3
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 3.2e-60 236.9 327 42.8
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 4.2e-60 236.5 477 35.4
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 2.1e-59 234.2 355 41.4
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 1.7e-48 198.0 472 31.8
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.4e-47 194.9 239 43.5
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 2.0e-46 191.0 204 49.0
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 5.5e-44 183.0 379 33.0
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 4.7e-43 179.9 206 46.6
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 6.7e-42 176.0 259 37.8
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 6.3e-40 169.5 189 45.5
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 3.8e-37 160.2 235 38.3
Cpa.g.sc69.59 Carica papaya HOM05D006564 ORTHO05D007772 6.3e-32 142.9 138 52.9
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.8e-31 141.4 203 39.9
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 8.6e-29 132.5 185 40.0
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 1.6e-27 128.3 191 40.8
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 1.2e-25 122.1 120 49.2
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 1.5e-25 121.7 328 30.2
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 4.9e-24 116.7 133 45.9
Hund06002 Selenicereus undatus HOM05D006564 ORTHO05D007772 7.0e-23 112.8 142 46.5
ClCG08G018020 Citrullus lanatus HOM05D006564 ORTHO05D007772 9.2e-23 112.5 130 42.3
Mapoly0088s0064 Marchantia polymorpha HOM05D006564 ORTHO05D007772 1.2e-22 112.1 394 26.1
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 3.5e-22 110.5 133 45.1
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 1.1e-20 105.5 412 26.2
AagrBONN_evm.TU.Sc2ySwM_362.2494 Anthoceros agrestis HOM05D006564 ORTHO05D007772 7.3e-20 102.8 457 23.0
Actinidia01700 Actinidia chinensis HOM05D006564 ORTHO05D007772 6.1e-19 99.8 96 51.0
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 1.4e-18 98.6 108 50.0
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.8e-18 98.2 301 26.2
TAR374G1125 Trochodendron aralioides HOM05D006564 ORTHO05D007772 2.3e-18 97.8 109 45.9
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.2e-17 95.5 133 39.1
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 3.7e-16 90.5 108 42.6
Pp3c7_26620 Physcomitrium patens HOM05D006564 ORTHO05D007772 3.2e-15 87.4 447 20.8
SHI17545 Sapria himalayana HOM05D006564 ORTHO05D007772 1.2e-14 85.5 110 46.4
SEGI_21655 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 5.0e-13 80.1 197 30.5
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.1e-12 79.0 91 44.0
SHI17558 Sapria himalayana HOM05D006564 ORTHO05D007772 1.1e-10 72.4 87 42.5
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 1.8e-10 71.6 64 54.7
CBR_g8804 Chara braunii HOM05D006564 ORTHO05D007772 3.1e-10 70.9 205 25.4
SEGI_36736 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 3.1e-10 70.9 93 35.5
HanXRQChr12g0383591 Helianthus annuus HOM05D006564 ORTHO05D007772 3.4e-09 67.4 86 40.7
Gohir.1Z049603 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.3e-08 65.5 55 63.6
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 1.9e-07 61.6 71 43.7
Os06g0708200 Oryza sativa ssp. japonica HOM05D006564 ORTHO05D007772 2.4e-07 61.2 112 35.7
Gohir.D06G182100 Gossypium hirsutum HOM05D006564 ORTHO05D007772 5.4e-07 60.1 60 48.3
Migut.E00618 Erythranthe guttata HOM05D006564 ORTHO05D007772 7.0e-07 59.7 66 50.0


User provided reference genes

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