Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-160 569.7 277 100.0
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-133 479.2 285 86.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-128 463.4 284 84.2
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.2e-128 463.4 284 84.2
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.6e-107 393.3 269 75.1
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 5.6e-89 331.6 266 65.4
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.9e-77 292.7 256 60.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.0e-74 284.3 257 60.7
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.9e-73 280.0 249 59.4
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-59 234.2 228 53.5
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.6e-59 233.8 228 58.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.6e-59 232.3 271 48.3
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.3e-58 230.7 242 52.5
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 2.3e-58 229.9 236 52.5
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.5e-57 227.3 271 48.0
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.3e-56 224.2 280 46.1
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.0e-55 218.0 280 45.4
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.3e-53 214.2 280 44.3
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 5.0e-53 212.2 277 43.7
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 6.5e-53 211.8 251 47.0
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.5e-53 211.5 268 46.3
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 8.5e-53 211.5 282 43.3
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.9e-52 210.3 261 46.7
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 7.2e-52 208.4 277 44.8
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 9.4e-52 208.0 282 43.6
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 9.4e-52 208.0 282 42.6
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.4e-52 208.0 184 60.3
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.2e-51 207.6 279 43.0
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.6e-51 207.2 281 43.1
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.1e-51 206.8 224 48.2
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 7.9e-51 204.9 273 42.9
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 2.3e-50 203.4 262 48.1
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 6.7e-50 201.8 283 42.0
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 8.8e-50 201.4 233 48.5
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.5e-49 200.7 169 62.7
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.0e-49 200.3 311 39.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.0e-49 200.3 282 42.2
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.6e-49 199.9 280 40.7
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 3.3e-49 199.5 284 40.8
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.3e-49 199.5 283 42.0
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 7.4e-49 198.4 283 42.0
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 7.4e-49 198.4 283 41.3
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 7.4e-49 198.4 282 42.6
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 7.4e-49 198.4 282 40.4
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 7.4e-49 198.4 267 41.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 9.7e-49 198.0 277 43.7
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.7e-48 197.2 284 41.9
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.8e-48 196.4 226 45.6
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.7e-48 196.1 215 52.1
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 3.7e-48 196.1 277 41.9
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 4.8e-48 195.7 308 39.9
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.8e-48 195.7 283 42.8
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.8e-48 195.7 282 40.8
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 6.3e-48 195.3 296 40.2
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 6.3e-48 195.3 282 42.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.2e-48 194.9 283 40.6
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.1e-47 194.5 283 40.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.1e-47 194.5 283 40.3
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.1e-47 194.5 275 41.5
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.4e-47 194.1 291 39.5
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.8e-47 193.7 287 39.7
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-47 193.7 241 45.6
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.4e-47 193.4 281 41.6
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.4e-47 193.4 283 41.3
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.4e-47 193.4 279 42.3
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 3.1e-47 193.0 328 37.8
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.1e-47 193.0 283 41.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 4.1e-47 192.6 286 40.2
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 5.3e-47 192.2 291 39.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 5.3e-47 192.2 289 39.8
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 5.3e-47 192.2 285 40.0
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 5.3e-47 192.2 285 39.6
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 9.1e-47 191.4 286 40.2
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 9.1e-47 191.4 256 41.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.2e-46 191.0 288 40.3
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 3.4e-46 189.5 292 40.1
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.4e-46 189.5 308 39.9
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.0e-45 188.0 258 43.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.9e-45 186.4 281 39.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.9e-45 186.4 185 51.9
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.8e-45 186.0 279 38.7
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.5e-45 184.9 289 39.8
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-44 184.5 229 47.2
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.9e-44 183.7 279 38.7
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.5e-44 183.3 267 42.7
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.5e-44 183.3 299 38.1
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.2e-44 183.0 327 38.2
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.2e-44 183.0 326 38.0
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 5.5e-44 182.2 267 40.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.2e-44 181.8 278 38.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 7.2e-44 181.8 351 35.6
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.2e-44 181.8 195 49.7
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 2.1e-43 180.3 318 35.5
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.7e-43 179.9 297 39.7
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.6e-43 179.5 227 45.4
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.0e-42 177.9 279 37.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-42 177.6 233 45.9
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-42 177.6 329 36.8
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 3.0e-42 176.4 269 40.1
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.9e-42 176.0 184 48.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 5.2e-42 175.6 287 38.7
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.1e-41 174.5 188 48.4
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.8e-40 169.9 184 48.9
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 8.2e-40 168.3 246 38.2
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.4e-39 167.5 180 55.0
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.8e-39 167.2 192 46.4
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.4e-39 166.8 323 37.2
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 4.1e-39 166.0 227 40.5
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 7.7e-38 161.8 322 35.7
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-37 160.6 145 57.2
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 2.2e-37 160.2 175 54.3
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.2e-35 154.5 179 50.8
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.7e-35 153.3 224 39.7
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 3.6e-35 152.9 180 46.7
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 6.1e-35 152.1 250 38.0
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.0e-34 151.4 68 100.0
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.0e-34 151.4 195 42.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.6e-33 146.7 257 38.1
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.6e-33 146.7 204 43.1
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 6.3e-32 142.1 279 34.4
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 8.2e-32 141.7 147 51.7
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.1e-28 131.3 188 39.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.1e-28 131.3 163 43.6
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.5e-28 131.0 193 43.0
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 5.5e-28 129.0 162 43.2
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 7.2e-28 128.6 162 43.2
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.1e-27 127.1 161 41.6
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.0e-26 124.8 219 38.8
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 7.0e-23 112.1 123 46.3
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.3e-21 107.8 137 44.5
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.3e-21 107.8 188 35.6
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.5e-17 92.0 114 44.7
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 3.7e-16 89.7 244 29.1
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 6.3e-16 89.0 122 38.5
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.9e-14 82.4 159 38.4
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.6e-13 79.0 159 35.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.9e-12 77.4 114 41.2
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 4.3e-12 76.3 157 32.5
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.2e-11 74.7 132 34.8
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 4.7e-11 72.8 168 33.3
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 3.0e-10 70.1 43 62.8
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 8.9e-10 68.6 62 46.8
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 8.9e-10 68.6 64 43.8
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 2.0e-09 67.4 61 55.7
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.3e-08 64.7 220 27.3
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.9e-08 63.5 81 45.7
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.9e-08 63.5 81 45.7


User provided reference genes

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