Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.6e-129 466.1 238 100.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 1.1e-128 463.4 238 99.2
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 2.0e-127 459.1 238 98.3
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.4e-120 436.4 238 95.4
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 2.9e-110 402.1 241 86.3
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 2.5e-109 399.1 205 97.6
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 3.0e-107 392.1 241 85.1
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 2.5e-106 389.0 238 82.8
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 4.3e-106 388.3 241 83.0
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 6.5e-102 374.4 242 83.1
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-101 373.6 242 82.6
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 2.5e-101 372.5 242 82.6
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.0e-99 367.1 239 79.5
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 9.7e-98 360.5 267 75.3
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 4.8e-97 358.2 241 77.6
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 1.8e-96 356.3 290 69.7
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 2.1e-84 316.2 239 69.9
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 5.3e-80 301.6 241 68.9
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 7.0e-80 301.2 242 66.1
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 6.5e-78 294.7 151 94.0
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.7e-76 289.3 194 72.2
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.7e-76 289.3 217 67.7
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 2.3e-75 286.2 194 71.6
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.3e-75 286.2 194 71.6
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.3e-75 286.2 242 63.6
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.2e-74 283.9 247 60.3
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 3.4e-74 282.3 243 60.9
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 5.7e-74 281.6 239 61.1
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 3.7e-73 278.9 249 59.8
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 8.3e-73 277.7 183 74.9
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 1.8e-72 276.6 193 69.9
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.8e-72 276.6 173 76.3
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 2.4e-72 276.2 173 77.5
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 3.1e-72 275.8 236 62.3
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 4.1e-72 275.4 237 61.2
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 5.4e-72 275.0 249 62.2
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 7.0e-72 274.6 244 60.7
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 7.0e-72 274.6 243 59.7
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 9.1e-72 274.2 182 70.9
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 2.0e-71 273.1 194 69.6
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.7e-71 272.7 240 62.5
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 2.7e-71 272.7 245 61.2
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.0e-70 270.8 173 75.1
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.0e-70 270.8 179 72.1
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.3e-70 270.4 234 60.3
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.3e-70 270.4 291 52.9
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 1.7e-70 270.0 237 61.6
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 2.3e-70 269.6 235 60.4
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.9e-70 269.2 247 59.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 3.8e-70 268.9 172 75.0
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 5.0e-70 268.5 241 59.3
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 6.6e-70 268.1 246 61.8
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 5.5e-69 265.0 244 59.4
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 5.5e-69 265.0 235 59.1
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 5.5e-69 265.0 201 67.2
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 9.5e-69 264.2 191 70.7
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.2e-68 263.8 253 57.3
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 6.1e-68 261.5 160 77.5
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 6.1e-68 261.5 160 77.5
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 6.1e-68 261.5 237 59.1
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 5.2e-67 258.5 156 78.8
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 8.9e-67 257.7 233 60.5
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.5e-66 256.9 202 64.9
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 9.8e-66 254.2 156 75.6
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 2.2e-65 253.1 154 76.6
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.8e-65 252.7 176 69.9
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 6.3e-65 251.5 185 67.0
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 6.3e-65 251.5 154 76.6
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 6.3e-65 251.5 154 76.6
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.4e-64 250.4 156 75.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-64 250.4 202 62.9
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.8e-64 250.0 155 74.8
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 2.4e-64 249.6 158 74.7
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 2.4e-64 249.6 160 73.1
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 3.1e-64 249.2 194 64.4
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 4.1e-64 248.8 154 74.7
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 5.4e-64 248.4 157 73.9
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 7.0e-64 248.1 234 55.1
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.0e-63 246.5 188 66.0
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 3.5e-63 245.7 159 71.1
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 5.9e-63 245.0 160 73.1
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 5.9e-63 245.0 160 73.1
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.3e-62 243.8 177 67.2
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.3e-62 243.8 159 73.0
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 1.7e-62 243.4 154 73.4
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.3e-62 243.0 224 61.2
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 2.9e-62 242.7 154 72.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.9e-62 242.7 175 69.1
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 2.9e-62 242.7 161 72.7
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 2.5e-61 239.6 154 72.1
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 3.3e-61 239.2 297 49.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 7.3e-61 238.0 191 63.9
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.2e-60 237.3 177 66.7
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 2.1e-60 236.5 226 55.3
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.8e-60 236.1 218 58.3
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.0e-59 234.2 160 71.9
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 2.3e-59 233.0 204 59.3
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 5.2e-59 231.9 174 64.9
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 6.8e-59 231.5 154 68.8
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 4.1e-56 222.2 129 89.1
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.3e-54 217.2 155 68.4
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 8.6e-54 214.5 198 56.1
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.5e-53 213.8 152 66.4
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 5.6e-53 211.8 151 66.9
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 3.6e-52 209.1 154 64.9
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 6.2e-52 208.4 205 59.0
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 2.9e-49 199.5 120 80.0
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 3.7e-49 199.1 170 56.5
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.4e-48 196.4 213 48.4
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 9.2e-48 194.5 143 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 3.0e-46 189.5 144 61.1
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.7e-41 172.6 153 56.9
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 3.0e-38 162.9 144 59.7
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 2.1e-36 156.8 166 49.4
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.2e-34 151.0 87 78.2
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.6e-28 129.4 138 51.4
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.6e-28 129.4 138 51.4
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 9.0e-27 124.8 85 74.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.0e-26 123.6 119 47.1
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.2e-23 114.4 116 44.8
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 4.6e-23 112.5 65 80.0
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 8.7e-22 108.2 120 45.0
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 1.3e-20 104.4 134 39.6
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 3.2e-16 89.7 124 46.8
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 3.5e-15 86.3 112 44.6
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 9.0e-11 71.6 37 78.4
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 2.9e-09 66.6 118 37.3
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 9.3e-08 61.6 43 69.8
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-07 60.5 137 29.9
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-07 60.5 137 29.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 7.9e-07 58.5 114 33.3
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.7e-06 55.5 114 30.7


User provided reference genes

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