Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47283 Brassica carinata HOM05D008570 ORTHO05D005639 1.7e-71 273.1 196 100.0
BolC6t40053H Brassica oleracea HOM05D008570 ORTHO05D005639 1.7e-71 273.1 196 100.0
A07p41750 Brassica napus HOM05D008570 ORTHO05D005639 6.2e-58 228.0 196 89.8
C06p50130 Brassica napus HOM05D008570 ORTHO05D005639 6.4e-55 218.0 200 86.0
BraA07t31704Z Brassica rapa HOM05D008570 ORTHO05D005639 6.4e-55 218.0 202 87.1
A07p28610 Brassica napus HOM05D008570 ORTHO05D005639 1.3e-52 210.3 199 84.4
BolC2t09364H Brassica oleracea HOM05D008570 ORTHO05D005639 2.5e-51 206.1 197 86.3
BcaC08g47112 Brassica carinata HOM05D008570 ORTHO05D005639 3.3e-51 205.7 199 85.9
C02p33360 Brassica napus HOM05D008570 ORTHO05D005639 1.7e-47 193.4 197 83.8
Carub.0002s2307 Capsella rubella HOM05D008570 ORTHO05D005639 2.9e-47 192.6 199 86.4
Thhalv10019152m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.1e-45 186.4 199 80.9
BraA02t07079Z Brassica rapa HOM05D008570 ORTHO05D005639 1.5e-43 180.3 196 81.6
A02p20480 Brassica napus HOM05D008570 ORTHO05D005639 3.3e-43 179.1 196 81.1
BcaB05g24972 Brassica carinata HOM05D008570 ORTHO05D005639 2.4e-41 172.9 198 79.3
CARHR069730 Cardamine hirsuta HOM05D008570 ORTHO05D005639 2.4e-38 162.9 196 78.6
C06p32190 Brassica napus HOM05D008570 ORTHO05D005639 3.5e-37 159.1 167 75.4
Sp5g31320 Schrenkiella parvula HOM05D008570 ORTHO05D005639 4.6e-37 158.7 199 75.4
AT1G76180 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 3.3e-35 152.5 199 77.4
THA.LOC104809672 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 5.3e-33 145.2 204 70.1
Aa31LG4G6290 Aethionema arabicum HOM05D008570 ORTHO05D005639 1.8e-28 130.2 202 68.3
AL2G36240 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 7.4e-27 124.8 136 80.1
THA.LOC104813763 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 2.9e-23 112.8 193 65.8
BcaC08g45541 Brassica carinata HOM05D008570 ORTHO05D005639 1.9e-22 110.2 167 72.5
AL1G33370 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 2.1e-21 106.7 183 54.1
Carub.0001s1991 Capsella rubella HOM05D008570 ORTHO05D005639 5.7e-19 98.6 189 51.9
AT1G20440 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 7.4e-19 98.2 190 52.1
Carub.0001s1992 Capsella rubella HOM05D008570 ORTHO05D005639 9.7e-19 97.8 176 58.0
BNapus_Darmor_BZH_scaffold_170p00020 Brassica napus HOM05D008570 ORTHO05D005639 1.4e-17 94.0 178 54.5
BcaNung03383 Brassica carinata HOM05D008570 ORTHO05D005639 3.1e-17 92.8 208 59.1
C07p23020 Brassica napus HOM05D008570 ORTHO05D005639 3.1e-17 92.8 208 59.1
Sp1g18160 Schrenkiella parvula HOM05D008570 ORTHO05D005639 5.3e-17 92.0 219 56.6
BcaC05g25955 Brassica carinata HOM05D008570 ORTHO05D005639 6.9e-17 91.7 179 55.3
C05p19040 Brassica napus HOM05D008570 ORTHO05D005639 6.9e-17 91.7 179 55.3
BolC5t30605H Brassica oleracea HOM05D008570 ORTHO05D005639 1.5e-16 90.5 182 52.2
BcaB03g14320 Brassica carinata HOM05D008570 ORTHO05D005639 4.5e-16 89.0 215 56.7
BcaB07g32047 Brassica carinata HOM05D008570 ORTHO05D005639 4.5e-16 89.0 187 49.7
A07p15780 Brassica napus HOM05D008570 ORTHO05D005639 5.9e-16 88.6 162 58.0
BraA07t29305Z Brassica rapa HOM05D008570 ORTHO05D005639 5.9e-16 88.6 211 58.3
BolC7t42843H Brassica oleracea HOM05D008570 ORTHO05D005639 7.7e-16 88.2 212 57.5
CARHR020900 Cardamine hirsuta HOM05D008570 ORTHO05D005639 1.3e-15 87.4 169 52.7
Thhalv10008313m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.2e-15 86.7 259 51.0
A07p15670 Brassica napus HOM05D008570 ORTHO05D005639 2.9e-15 86.3 211 57.8
BraA06t24754Z Brassica rapa HOM05D008570 ORTHO05D005639 3.8e-15 85.9 185 48.1
TAR376G0148 Trochodendron aralioides HOM05D008201 ORTHO05D005639 4.6e-13 79.0 190 47.4
Medtr3g117290 Medicago truncatula HOM05D015205 ORTHO05D005639 6.1e-13 78.6 154 59.1
AL1G33380 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 7.9e-13 78.2 175 56.6
Psat5g004800 Pisum sativum HOM05D015205 ORTHO05D005639 1.8e-12 77.0 163 50.9
Aqoxy6G01838 Aquilegia oxysepala HOM05D008201 ORTHO05D005639 5.1e-12 75.5 185 36.2
Lj4A14T47 Lonicera japonica HOM05D008201 ORTHO05D005639 6.7e-12 75.1 152 40.8
TPR.G32200 Trifolium pratense HOM05D015205 ORTHO05D005639 1.5e-11 73.9 174 52.3
Lsat_1_v5_gn_8_27820 Lactuca sativa HOM05D008201 ORTHO05D005639 3.3e-11 72.8 162 51.2
AT1G20450 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 9.7e-11 71.2 187 54.5
Thhalv10008706m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.8e-10 69.7 162 48.8
CiPaw.08G071500 Carya illinoinensis HOM05D008201 ORTHO05D005639 1.1e-09 67.8 198 43.4
Lsat_1_v5_gn_8_28441 Lactuca sativa HOM05D008570 ORTHO05D005639 1.1e-09 67.8 122 55.7
Sabra05G0191700 Salix brachista HOM05D008201 ORTHO05D005639 1.1e-09 67.8 160 36.9
CSS0003901 Camellia sinensis var. sinensis HOM05D008201 ORTHO05D005639 2.4e-09 66.6 194 33.0
THA.LOC104813170 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 4.1e-09 65.9 178 50.6
Gohir.A01G107800 Gossypium hirsutum HOM05D008201 ORTHO05D005639 6.9e-09 65.1 169 52.7
arahy.Tifrunner.gnm1.ann1.QP4M0U Arachis hypogaea HOM05D008201 ORTHO05D005639 9.1e-09 64.7 175 49.7
Eucgr.F01726 Eucalyptus grandis HOM05D008201 ORTHO05D005639 1.5e-08 63.9 176 35.8
Gorai.009G189500 Gossypium raimondii HOM05D008201 ORTHO05D005639 1.5e-08 63.9 162 46.3
Lj1g0003360 Lotus japonicus HOM05D015205 ORTHO05D005639 1.5e-08 63.9 158 48.1
Gohir.A05G181000 Gossypium hirsutum HOM05D008201 ORTHO05D005639 2.0e-08 63.5 162 47.5
vmacro04391 Vaccinium macrocarpon HOM05D008201 ORTHO05D005639 5.9e-08 62.0 177 49.7
Oeu016882.1 Olea europaea HOM05D008201 ORTHO05D005639 1.0e-07 61.2 182 48.9
Potri.005G248100 Populus trichocarpa HOM05D008201 ORTHO05D005639 1.3e-07 60.8 243 37.9
Duzib093G2238 Durio zibethinus HOM05D008201 ORTHO05D005639 1.7e-07 60.5 62 61.3
arahy.Tifrunner.gnm1.ann1.DA1J6X Arachis hypogaea HOM05D008201 ORTHO05D005639 2.2e-07 60.1 159 49.7
Ca_15345_v3 Cicer arietinum L. HOM05D015205 ORTHO05D005639 2.2e-07 60.1 211 39.3
Ca_30250_v3 Cicer arietinum L. HOM05D015205 ORTHO05D005639 2.2e-07 60.1 211 39.3
Manes.05G140400 Manihot esculenta HOM05D008201 ORTHO05D005639 2.9e-07 59.7 162 43.2
ECA233G2943 Erigeron canadensis HOM05D002022 ORTHO05D002056 5.0e-07 58.9 203 38.4
Aa31LG7G4750 Aethionema arabicum HOM05D008570 ORTHO05D059195 6.5e-07 58.5 49 71.4
CDE04G1989 Ceratophyllum demersum HOM05D064241 ORTHO05D005639 1.9e-06 57.0 88 47.7
HanXRQChr08g0216051 Helianthus annuus HOM05D008201 ORTHO05D005639 4.2e-06 55.8 176 45.5
Glyma.04G009400 Glycine max HOM05D008201 ORTHO05D005639 7.2e-06 55.1 92 48.9
Gohir.D01G094300 Gossypium hirsutum HOM05D008201 ORTHO05D005639 7.2e-06 55.1 165 53.9
TWI56G0959 Tripterygium wilfordii HOM05D008201 ORTHO05D005639 7.2e-06 55.1 158 53.8
Actinidia29780 Actinidia chinensis HOM05D008201 ORTHO05D005639 9.4e-06 54.7 136 35.3


User provided reference genes

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