Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2285.0 1155 100.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 2273.0 1160 99.5
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2215.7 1160 97.0
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2196.4 1163 95.9
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 2184.8 1163 95.4
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2077.0 1170 90.6
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 2041.9 1169 88.4
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 2017.3 1169 87.4
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1978.8 1169 86.8
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1964.9 1165 85.8
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1956.8 1169 85.9
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1900.2 1169 83.4
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1734.5 1169 76.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1679.5 1165 73.7
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1438.7 1167 63.3
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1429.1 1168 61.8
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1416.0 1170 61.6
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1407.9 1172 60.1
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1407.5 1166 61.4
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1401.7 1165 61.9
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1393.3 1179 60.9
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1388.2 1173 60.9
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1373.6 1170 59.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1370.5 1167 59.1
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1361.7 1384 52.9
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1357.8 1190 59.6
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1357.8 1171 60.1
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1357.0 1186 58.8
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1350.5 1170 60.9
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1346.3 1119 62.2
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1345.1 1210 57.0
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1336.6 1175 58.6
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1333.5 1169 58.8
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1332.0 1171 58.1
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1331.6 1170 59.2
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1323.5 1171 59.3
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1321.2 1173 58.5
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1318.9 1172 58.6
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1318.9 1174 58.0
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1318.5 1172 58.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1318.5 1166 57.2
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1307.0 1172 57.8
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1303.5 1172 57.9
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1289.6 1168 56.3
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1289.6 1168 56.3
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1284.6 1166 56.5
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1277.7 1171 55.2
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1271.9 1172 56.4
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1261.1 1171 55.8
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1260.7 1200 56.0
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1250.3 1171 54.4
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1248.0 1172 56.1
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1246.5 1170 55.1
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1231.9 1159 56.2
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1225.3 1037 60.8
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1222.6 1153 54.5
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1221.8 1159 55.2
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1220.3 1380 49.6
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1216.4 1160 55.6
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1211.1 1170 53.9
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1208.7 1162 53.6
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1208.4 1162 55.4
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1198.0 1168 54.2
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1194.5 1168 54.0
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1190.3 1164 53.5
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1186.4 1159 53.6
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1186.4 1171 52.4
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1184.9 1161 52.9
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1181.4 1168 52.7
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1164.8 1211 51.6
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1160.2 1164 52.0
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1159.4 1171 52.0
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1157.5 1054 56.7
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1139.4 1164 51.8
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1122.8 1047 55.9
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1122.1 1176 50.3
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1112.8 1126 52.6
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1101.7 1170 50.3
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 8.1e-307 1057.4 1185 47.2
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 1.0e-301 1040.4 1181 48.1
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.1e-290 1003.8 1101 49.1
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 3.1e-290 1002.3 1111 48.3
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 2.4e-287 992.6 1156 48.0
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 7.9e-286 987.6 1102 50.7
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.1e-282 977.2 1207 45.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 6.7e-277 958.0 1174 44.3
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 7.4e-260 901.4 834 56.1
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.9e-249 865.1 755 59.6
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.1e-238 830.1 785 56.1
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.8e-229 800.4 715 58.5
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 2.3e-224 783.5 1096 44.2
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.1e-190 670.6 1188 36.4
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.0e-184 650.2 759 48.2
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 3.0e-168 597.0 576 53.1
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.5e-167 594.7 1185 34.8
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.4e-149 535.0 611 48.9
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.9e-147 527.3 435 62.5
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.0e-139 502.3 1116 34.0
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 3.9e-128 463.8 458 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.5e-127 461.8 844 34.4
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.2e-116 425.6 391 55.2
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.4e-111 407.5 420 51.9
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.6e-103 381.3 524 40.6
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 6.0e-92 343.6 280 62.1
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.6e-89 335.5 418 41.6
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.3e-82 311.2 209 69.4
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-66 257.3 1108 25.3
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.6e-65 255.8 180 66.1
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 9.0e-64 250.0 204 62.3
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.4e-45 189.5 180 56.7
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.5e-45 188.7 249 41.4
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 4.2e-45 188.0 235 45.1
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.8e-33 148.7 123 57.7
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.2e-30 139.0 328 31.1
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 3.7e-25 121.7 152 43.4
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.2e-20 106.7 490 24.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 8.2e-17 94.0 100 53.0
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 6.5e-14 84.3 64 59.4
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 8.5e-14 84.0 46 80.4
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.9e-13 82.8 46 80.4
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 5.5e-13 81.3 351 22.8
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 4.7e-12 78.2 58 56.9
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 4.0e-11 75.1 53 64.2
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.4e-08 66.6 56 60.7
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 3.1e-08 65.5 78 42.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 7.0e-08 64.3 51 62.7
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 7.7e-07 60.8 59 54.2
BcaB04g18891 Brassica carinata HOM05D005978 ORTHO05D007472 8.5e-06 57.4 42 64.3


User provided reference genes

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