Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2266.9 1170 100.0
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2130.5 1171 92.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 2130.1 1171 92.1
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2100.1 1171 91.2
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 2084.3 1171 90.7
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2078.5 1170 90.6
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 2066.6 1170 88.6
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 2056.6 1170 90.7
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 2050.4 1170 87.9
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 2039.6 1170 89.7
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 2007.3 1166 86.5
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1986.1 1170 87.8
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1745.7 1170 76.1
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1719.9 1167 76.5
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1428.3 1168 62.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1419.4 1171 61.3
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1416.7 1169 61.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1404.0 1173 59.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1395.9 1166 61.4
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1384.0 1170 59.7
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1374.0 1180 59.7
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1372.5 1173 60.5
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1369.4 1385 52.5
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1369.0 1170 58.1
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1367.8 1174 59.9
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1367.8 1173 61.3
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1349.7 1180 59.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1348.6 1168 58.2
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1346.3 1189 58.2
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1336.6 1171 59.1
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1332.8 1210 56.0
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1319.7 1120 60.6
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1318.9 1173 58.1
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1318.5 1173 58.1
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1318.5 1170 57.8
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1317.8 1173 58.6
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1312.4 1172 57.0
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1302.7 1174 57.4
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1298.5 1177 57.1
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1297.7 1173 57.2
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1296.6 1169 55.9
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1291.9 1173 56.7
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1280.8 1170 55.9
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1276.5 1173 56.0
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1273.5 1169 55.3
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1266.9 1172 54.3
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1263.4 1173 55.8
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1260.7 1167 55.2
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1253.0 1038 61.2
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1249.6 1175 55.4
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1248.4 1173 55.8
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1246.5 1203 55.0
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1236.5 1172 53.4
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1214.1 1173 53.5
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1210.7 1166 55.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1207.6 1166 54.4
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1206.8 1381 49.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1203.3 1167 54.6
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1197.6 1163 54.5
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1193.3 1162 53.9
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1190.3 1167 53.0
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1189.5 1055 57.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1180.6 1162 53.7
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1175.2 1178 52.0
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1170.6 1181 52.5
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1169.1 1169 52.9
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1168.7 1169 53.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1156.4 1162 51.5
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1156.4 1168 52.1
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1152.5 1206 50.8
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1148.3 1169 51.4
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1142.5 1178 51.1
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1136.3 1169 50.7
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1105.9 1048 55.1
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1099.3 1172 50.2
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1087.8 1174 48.9
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1083.6 1135 51.3
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 1.3e-309 1066.6 1171 48.5
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 8.2e-299 1030.8 1186 46.2
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 8.2e-291 1004.2 1181 46.3
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 6.1e-286 988.0 1102 50.4
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.6e-281 973.4 1118 47.9
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 3.5e-281 972.2 1110 46.9
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 2.2e-275 953.0 1167 46.6
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 9.1e-274 947.6 1211 44.3
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.1e-266 924.1 1176 43.4
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 3.0e-248 862.8 835 54.0
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.8e-238 829.7 755 57.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.4e-236 822.4 716 58.9
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 3.5e-225 786.2 787 53.7
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.2e-212 744.6 1097 42.4
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.5e-194 683.7 760 49.2
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 1.8e-176 624.4 1191 34.3
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.2e-174 617.5 581 54.2
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 6.5e-155 552.7 1191 33.3
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.5e-148 530.0 614 48.2
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 5.7e-143 513.1 435 61.1
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 1.1e-133 482.3 463 53.1
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 8.9e-128 462.6 1129 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 4.3e-122 443.7 844 34.0
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 6.2e-121 439.9 392 56.9
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.1e-97 361.7 421 47.3
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.6e-92 345.5 424 42.5
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.8e-88 332.0 527 37.0
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 5.3e-80 303.9 280 56.8
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.0e-66 258.8 209 59.8
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 7.4e-66 256.9 204 63.2
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-66 256.5 1114 25.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 8.8e-51 206.8 180 55.6
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.5e-50 206.1 180 59.4
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.1e-48 198.4 254 43.7
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.5e-45 189.5 235 43.8
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.4e-34 151.8 123 56.9
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.1e-29 136.7 331 30.8
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 8.3e-25 120.6 145 45.5
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 7.0e-16 90.9 94 53.2
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.3e-14 86.7 519 23.3
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 8.6e-14 84.0 58 65.5
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.5e-13 83.2 46 78.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 3.3e-13 82.0 46 78.3
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 3.3e-13 82.0 58 56.9
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 4.0e-11 75.1 53 64.2
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.5e-10 73.2 183 27.9
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 4.4e-10 71.6 78 42.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 3.7e-09 68.6 52 65.4
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 2.4e-08 65.9 56 58.9
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 3.5e-07 62.0 58 56.9
BcaB04g18891 Brassica carinata HOM05D005978 ORTHO05D007472 3.0e-06 58.9 42 66.7
TAR365G1006 Trochodendron aralioides HOM05D001130 ORTHO05D001052 3.9e-06 58.5 135 28.9


User provided reference genes

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