Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1176.0 583 100.0
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1101.7 577 95.5
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 4.0e-312 1074.3 590 90.8
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 5.9e-306 1053.5 590 88.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 1.6e-303 1045.4 590 88.1
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 3.6e-303 1044.3 600 87.2
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 4.7e-303 1043.9 590 88.0
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 8.0e-303 1043.1 590 87.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 8.8e-302 1039.6 583 88.7
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 9.7e-301 1036.2 590 87.5
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-299 1032.7 603 85.7
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 1.8e-299 1031.9 614 84.7
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 4.1e-299 1030.8 592 87.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 5.3e-299 1030.4 592 87.0
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 7.0e-291 1003.4 590 84.1
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 5.6e-272 940.6 597 77.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 3.2e-251 871.7 595 77.5
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 4.0e-246 854.7 587 70.5
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 4.0e-246 854.7 587 70.2
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 1.3e-244 849.7 587 69.8
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 2.2e-244 849.0 587 69.5
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 4.9e-244 847.8 589 69.6
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 6.4e-244 847.4 587 69.7
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 2.4e-243 845.5 588 70.1
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 2.1e-242 842.4 588 69.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 2.7e-242 842.0 587 69.0
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 7.8e-242 840.5 589 69.4
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 3.0e-241 838.6 586 69.8
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 3.9e-241 838.2 583 69.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 1.5e-240 836.3 582 69.2
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 1.8e-238 829.3 582 69.2
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 3.1e-238 828.6 588 68.9
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 5.8e-237 824.3 581 68.2
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 9.3e-235 817.0 584 67.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 2.7e-234 815.5 558 71.3
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 4.6e-234 814.7 579 69.1
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 1.0e-233 813.5 581 66.8
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 1.3e-233 813.1 589 66.9
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 5.1e-233 811.2 581 66.4
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.6e-233 810.8 589 66.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 4.3e-232 808.1 584 68.2
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.3e-232 808.1 585 67.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.8e-231 805.4 587 66.6
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 1.4e-230 803.1 584 66.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 4.0e-230 801.6 583 67.9
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 5.3e-230 801.2 582 66.3
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 9.0e-230 800.4 585 67.0
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 1.5e-229 799.7 591 66.2
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 2.0e-229 799.3 584 67.3
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.6e-229 798.9 585 66.0
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 2.6e-229 798.9 582 66.3
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 4.5e-229 798.1 587 66.8
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 4.5e-229 798.1 585 67.5
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 4.9e-228 794.7 576 67.0
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 4.9e-228 794.7 636 62.7
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 1.9e-227 792.7 582 66.0
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 2.4e-227 792.3 582 65.5
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 1.2e-226 790.0 581 67.0
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 1.6e-226 789.6 598 64.9
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 2.7e-226 788.9 582 65.5
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 2.7e-226 788.9 582 65.3
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.5e-226 788.5 582 66.5
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 4.6e-226 788.1 591 65.3
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 6.0e-226 787.7 586 63.7
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 7.9e-226 787.3 581 65.1
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 1.0e-225 786.9 580 65.5
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 1.3e-225 786.6 587 65.6
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 3.9e-225 785.0 583 65.0
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 1.1e-224 783.5 580 64.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 3.3e-224 781.9 566 66.4
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 5.6e-224 781.2 613 63.0
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 1.6e-223 779.6 582 64.8
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 6.2e-223 777.7 589 65.5
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 1.8e-222 776.2 582 64.1
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 3.1e-222 775.4 591 63.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 3.4e-221 771.9 583 65.2
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 1.7e-220 769.6 601 61.6
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 2.5e-219 765.8 585 63.6
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 2.1e-218 762.7 596 62.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 7.9e-218 760.8 567 64.9
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 7.9e-218 760.8 574 64.3
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 3.0e-217 758.8 592 62.3
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.9e-216 756.1 589 62.5
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 3.3e-216 755.4 586 61.9
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 5.7e-216 754.6 573 63.2
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.2e-213 746.9 582 64.1
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 4.5e-213 745.0 583 64.7
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 1.0e-212 743.8 586 61.4
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 1.0e-212 743.8 586 61.4
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 7.9e-210 734.2 565 63.7
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 7.9e-210 734.2 583 64.3
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 3.3e-208 728.8 591 61.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 1.8e-206 723.0 579 61.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 3.4e-205 718.8 659 55.7
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 6.7e-201 704.5 651 55.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 2.2e-199 699.5 547 62.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 6.9e-198 694.5 542 62.2
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 1.2e-197 693.7 578 59.9
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 1.9e-195 686.4 582 57.0
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 5.9e-189 664.8 581 56.1
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.7e-188 663.3 485 67.2
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 1.7e-188 663.3 584 56.8
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 7.0e-182 641.3 559 59.6
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.2e-179 632.1 481 66.7
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 1.2e-176 624.0 592 52.5
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 2.2e-172 609.8 594 51.9
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.0e-165 586.6 580 49.1
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 3.3e-163 579.3 567 53.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 7.0e-158 561.6 599 49.7
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 1.3e-143 514.2 358 69.0
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.1e-142 511.1 573 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.7e-116 424.1 470 46.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.3e-111 407.9 500 44.6
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 3.3e-107 393.3 577 41.9
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.6e-85 321.2 257 63.8
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 4.2e-78 296.6 274 58.0
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.2e-77 295.0 223 65.0
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 7.0e-57 226.1 116 95.7
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 4.7e-45 186.8 234 44.0
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.4e-41 174.5 141 58.9
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 9.5e-30 136.0 99 62.6
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.3e-26 125.6 150 48.0
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 6.6e-23 113.2 100 55.0
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 4.4e-19 100.5 72 61.1
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.3e-15 89.0 144 36.8
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.1e-14 85.9 194 32.5
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 1.9e-14 85.1 313 24.3
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 6.2e-13 80.1 83 47.0
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 2.2e-10 71.6 94 44.7
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 7.1e-09 66.6 44 68.2
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 9.3e-09 66.2 59 59.3
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.6e-08 65.5 107 38.3
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.5e-06 58.9 45 57.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 5.6e-06 57.0 55 47.3


User provided reference genes

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