Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45138 Brassica carinata HOM05D001840 ORTHO05D095931 6.1e-87 324.3 190 100.0
BcaB02g07369 Brassica carinata HOM05D001840 ORTHO05D002076 3.7e-15 85.9 44 100.0
C06p27580 Brassica napus HOM05D001840 ORTHO05D002076 3.7e-15 85.9 44 100.0
BcaC08g45139 Brassica carinata HOM05D001840 ORTHO05D002076 1.8e-14 83.6 44 97.7
BolC6t37926H Brassica oleracea HOM05D001840 ORTHO05D002076 1.8e-14 83.6 44 97.7
A07p25590 Brassica napus HOM05D001840 ORTHO05D002076 6.9e-14 81.6 44 93.2
BraA07t30200Z Brassica rapa HOM05D001840 ORTHO05D002076 1.5e-13 80.5 44 90.9
Thhalv10005967m.g Eutrema salsugineum HOM05D001840 ORTHO05D002076 2.0e-13 80.1 44 90.9
CARHR171890 Cardamine hirsuta HOM05D001840 ORTHO05D002076 4.5e-13 79.0 44 90.9
AL5G43960 Arabidopsis lyrata HOM05D001840 ORTHO05D002076 5.9e-13 78.6 44 88.6
A04p01020 Brassica napus HOM05D001840 ORTHO05D002076 5.9e-13 78.6 44 88.6
BraA04t15819Z Brassica rapa HOM05D001840 ORTHO05D002076 5.9e-13 78.6 44 88.6
AT3G61580 Arabidopsis thaliana HOM05D001840 ORTHO05D002076 7.7e-13 78.2 44 88.6
Sp5g01830 Schrenkiella parvula HOM05D001840 ORTHO05D002076 1.3e-12 77.4 44 86.4
BcaC02g10234 Brassica carinata HOM05D001840 ORTHO05D002076 1.7e-12 77.0 44 86.4
C04p31240 Brassica napus HOM05D001840 ORTHO05D002076 1.7e-12 77.0 44 86.4
BolC4t24658H Brassica oleracea HOM05D001840 ORTHO05D002076 1.7e-12 77.0 44 86.4
Carub.0005s2827 Capsella rubella HOM05D001840 ORTHO05D002076 2.2e-12 76.6 44 84.1
BcaB02g08162 Brassica carinata HOM05D001840 ORTHO05D002076 1.4e-11 73.9 44 84.1
BcaC07g40659 Brassica carinata HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
BcaC07g40668 Brassica carinata HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
BcaC07g42681 Brassica carinata HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
A09p53640 Brassica napus HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
C08p36420 Brassica napus HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
BolC8t51225H Brassica oleracea HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
BraA09t40786Z Brassica rapa HOM05D001840 ORTHO05D002076 4.2e-11 72.4 44 81.8
THA.LOC104827608 Tarenaya hassleriana HOM05D001840 ORTHO05D002076 8.8e-09 64.7 43 72.1
A05p01620 Brassica napus HOM05D001840 ORTHO05D002076 9.7e-08 61.2 43 72.1
AT2G46210 Arabidopsis thaliana HOM05D001840 ORTHO05D002076 1.7e-07 60.5 43 72.1
BraA05t19158Z Brassica rapa HOM05D001840 ORTHO05D002076 1.7e-07 60.5 43 69.8
Sp4g28250 Schrenkiella parvula HOM05D001840 ORTHO05D002076 1.7e-07 60.5 43 69.8
AL4G45470 Arabidopsis lyrata HOM05D001840 ORTHO05D002076 2.2e-07 60.1 43 69.8
Carub.0004s2889 Capsella rubella HOM05D001840 ORTHO05D002076 2.2e-07 60.1 43 69.8
Aa31LG10G15420 Aethionema arabicum HOM05D001840 ORTHO05D002076 2.8e-07 59.7 43 65.1
C04p01830 Brassica napus HOM05D001840 ORTHO05D002076 2.8e-07 59.7 43 69.8
Thhalv10001443m.g Eutrema salsugineum HOM05D001840 ORTHO05D002076 3.7e-07 59.3 43 67.4
BcaC02g12501 Brassica carinata HOM05D001840 ORTHO05D002076 6.3e-07 58.5 43 67.4
BcaC02g12706 Brassica carinata HOM05D001840 ORTHO05D002076 8.2e-07 58.2 43 69.8
CARHR141480 Cardamine hirsuta HOM05D001840 ORTHO05D002076 8.2e-07 58.2 43 67.4
Aa31LG1G27590 Aethionema arabicum HOM05D001840 ORTHO05D002076 1.1e-06 57.8 43 67.4
arahy.Tifrunner.gnm1.ann1.W5G5TD Arachis hypogaea HOM05D001840 ORTHO05D002076 1.1e-06 57.8 39 71.8
THA.LOC104817325 Tarenaya hassleriana HOM05D001840 ORTHO05D002076 1.4e-06 57.4 43 67.4
Phvul.002G086300 Phaseolus vulgaris HOM05D001840 ORTHO05D002076 3.1e-06 56.2 39 66.7
arahy.Tifrunner.gnm1.ann1.PJH2K4 Arachis hypogaea HOM05D001840 ORTHO05D002076 4.1e-06 55.8 39 66.7
Lj4g0007629 Lotus japonicus HOM05D001840 ORTHO05D002076 5.3e-06 55.5 39 69.2
Potri.002G165800 Populus trichocarpa HOM05D001840 ORTHO05D002076 5.3e-06 55.5 39 64.1
Sabra02G0145700 Salix brachista HOM05D001840 ORTHO05D002076 5.3e-06 55.5 39 64.1
VMungo1215G2004 Vigna mungo HOM05D001840 ORTHO05D002076 5.3e-06 55.5 39 69.2
Lalb_Chr16g0385861 Lupinus albus HOM05D001840 ORTHO05D002076 7.0e-06 55.1 39 69.2
Ca_24225_v3 Cicer arietinum L. HOM05D001840 ORTHO05D002076 9.1e-06 54.7 39 66.7
Lalb_Chr05g0220431 Lupinus albus HOM05D001840 ORTHO05D002076 9.1e-06 54.7 39 69.2
Peaxi162Scf00327g00121 Petunia axillaris HOM05D001840 ORTHO05D002076 9.1e-06 54.7 42 57.1


User provided reference genes

Program Settings