Gene: AT3G61580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G61580
  • Transcript Identifier AT3G61580.1
  • Gene Type Coding gene
  • Location Chr3 : 22786253-22787602 : positive

Gene Family Information

  • ID HOM05D001840
  • #Genes/#Species 355/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G61580.1
  • symbol SLD1
  • Alias AtSLD1
  • full_name sphingoid LCB desaturase 1
  • uniprot Q9ZRP7

Descriptions

  • Description Fatty acid/sphingolipid desaturase
  • Computational description Fatty acid/sphingolipid desaturase; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT2G46210.1); Has 5416 Blast hits to 5306 proteins in 857 species: Archae - 2; Bacteria - 1062; Metazoa - 955; Fungi - 1609; Plants - 915; Viruses - 2; Other Eukaryotes - 871 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0006629
IDA
IBA
Gene Ontologylipid metabolic process1 2
GO:0006629
IEA
InterProlipid metabolic process
GO:0006665
IEA
GOA Databasesphingolipid metabolic process
GO:0070417
IMP
Gene Ontologycellular response to cold3
GO:0030148
IMP
Gene Ontologysphingolipid biosynthetic process3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0052631
IEA
GOA Databasesphingolipid delta-8 desaturase activity
GO:0052631
IDA
Gene Ontologysphingolipid delta-8 desaturase activity1
GO:0016717
IBA
Gene Ontologyoxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IEA
InterProintegral component of membrane
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
IDA
Gene Ontologyendoplasmic reticulum3
GO:0016020
IEA
GOA Databasemembrane
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001199 Cytochrome b5-like heme/steroid binding domain
IPR036400 Cytochrome b5-like heme/steroid binding domain superfamily
IPR012171 Fatty acid desaturase
IPR005804 Fatty acid desaturase domain
Mapman id Description
5.4.10 Lipid metabolism.sphingolipid biosynthesis.delta-8 sphingolipid desaturase (SLD)