Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 2.8e-126 455.3 232 100.0
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 2.8e-126 455.3 232 100.0
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.8e-126 455.3 232 100.0
BcaC08g44952 Brassica carinata HOM05D006642 ORTHO05D032904 3.4e-71 272.3 137 100.0
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 3.9e-19 99.4 351 30.2
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 6.7e-19 98.6 352 30.4
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 2.8e-17 93.2 355 29.0
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 2.4e-16 90.1 354 29.1
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.6e-15 86.7 350 28.6
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 3.4e-15 86.3 77 66.2
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.2e-14 83.6 363 27.3
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.4e-13 80.9 103 50.5
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.9e-13 80.5 184 34.2
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.9e-13 80.5 77 63.6
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.5e-13 80.1 103 53.4
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 4.2e-13 79.3 103 49.5
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.6e-12 77.4 57 77.2
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.6e-12 77.4 103 49.5
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 1.6e-12 77.4 56 75.0
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.1e-12 77.0 118 40.7
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 2.1e-12 77.0 345 27.8
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 2.7e-12 76.6 94 54.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 2.7e-12 76.6 56 75.0
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.6e-12 76.3 94 54.3
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.6e-12 76.3 94 54.3
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 3.6e-12 76.3 94 54.3
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 4.7e-12 75.9 56 75.0
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 4.7e-12 75.9 56 73.2
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 4.7e-12 75.9 77 59.7
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 4.7e-12 75.9 56 71.4
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 6.1e-12 75.5 77 58.4
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 7.9e-12 75.1 77 59.7
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 1.0e-11 74.7 77 57.1
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.0e-11 74.7 77 55.8
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.0e-11 74.7 77 57.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.4e-11 74.3 56 73.2
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.4e-11 74.3 77 55.8
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.4e-11 74.3 77 55.8
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 1.4e-11 74.3 77 54.5
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.4e-11 74.3 284 26.1
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 1.4e-11 74.3 94 52.1
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.4e-11 74.3 77 54.5
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 1.8e-11 73.9 77 58.4
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 2.3e-11 73.6 94 48.9
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 3.0e-11 73.2 45 84.4
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 3.0e-11 73.2 77 55.8
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 3.9e-11 72.8 77 57.1
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 5.1e-11 72.4 384 26.8
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 5.1e-11 72.4 77 55.8
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 5.1e-11 72.4 77 53.2
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 6.7e-11 72.0 383 27.2
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 6.7e-11 72.0 77 55.8
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 8.8e-11 71.6 77 55.8
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 8.8e-11 71.6 45 82.2
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 8.8e-11 71.6 104 44.2
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.1e-10 71.2 103 46.6
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.1e-10 71.2 104 45.2
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.5e-10 70.9 77 55.8
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 2.0e-10 70.5 77 53.2
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 2.0e-10 70.5 77 54.5
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 2.0e-10 70.5 77 51.9
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 2.0e-10 70.5 56 64.3
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.6e-10 70.1 77 53.2
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 4.4e-10 69.3 77 51.9
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 4.4e-10 69.3 56 66.1
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 4.4e-10 69.3 56 66.1
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 4.4e-10 69.3 77 54.5
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 4.4e-10 69.3 56 67.9
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 4.4e-10 69.3 56 64.3
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 4.4e-10 69.3 77 53.2
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 4.4e-10 69.3 77 55.8
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 5.7e-10 68.9 77 53.2
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 5.7e-10 68.9 77 53.2
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 7.4e-10 68.6 77 53.2
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 9.7e-10 68.2 77 50.6
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.3e-09 67.8 56 64.3
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.3e-09 67.8 77 51.9
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.2e-09 67.0 77 51.9
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.2e-09 67.0 45 73.3
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 2.8e-09 66.6 77 53.2
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 2.8e-09 66.6 119 35.3
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 2.8e-09 66.6 77 51.9
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 4.8e-09 65.9 56 62.5
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 4.8e-09 65.9 36 83.3
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 6.3e-09 65.5 103 42.7
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 8.2e-09 65.1 56 62.5
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 8.2e-09 65.1 45 75.6
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.4e-08 64.3 77 49.4
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 1.4e-08 64.3 45 75.6
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.4e-08 64.3 45 75.6
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 1.8e-08 63.9 77 51.9
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 3.1e-08 63.2 96 36.5
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 4.1e-08 62.8 45 71.1
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 4.1e-08 62.8 45 71.1
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 4.1e-08 62.8 45 71.1
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 4.1e-08 62.8 77 48.1
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 4.1e-08 62.8 77 51.9
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 7.0e-08 62.0 77 48.1
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 9.1e-08 61.6 50 70.0
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 2.6e-07 60.1 44 61.4
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 2.6e-07 60.1 77 46.8
BcaC07g40237 Brassica carinata HOM05D006642 ORTHO05D027104 4.5e-07 59.3 50 58.0
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 4.5e-07 59.3 56 53.6
Lalb_Chr24g0396421 Lupinus albus HOM05D000001 ORTHO05D009948 5.9e-07 58.9 99 28.3
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.7e-06 57.4 36 75.0
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.7e-06 57.4 36 75.0
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.7e-06 57.4 36 75.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.2e-06 57.0 36 75.0
Medtr4g011730 Medicago truncatula HOM05D000001 ORTHO05D009948 2.2e-06 57.0 99 28.3
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 3.8e-06 56.2 77 44.2
FAN25G0761 Fragaria x ananassa HOM05D002244 ORTHO05D002269 5.0e-06 55.8 144 27.8
Glyma.16G221300 Glycine max HOM05D000001 ORTHO05D009948 5.0e-06 55.8 100 27.0


User provided reference genes

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