Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44029 Brassica carinata HOM05D020905 ORTHO05D016076 7.1e-62 240.4 115 100.0
C06p15420 Brassica napus HOM05D000397 ORTHO05D000492 8.6e-60 233.4 115 96.5
C05p44450 Brassica napus HOM05D014197 ORTHO05D024266 5.6e-51 204.1 115 87.8
BolC6t36728H Brassica oleracea HOM05D014197 ORTHO05D016076 5.3e-49 197.6 99 97.0
BcaC08g44146 Brassica carinata HOM05D014197 ORTHO05D024266 3.8e-47 191.4 99 94.9
BolC3t15948H Brassica oleracea HOM05D014197 ORTHO05D024266 5.4e-46 187.6 98 92.9
BcaC01g05577 Brassica carinata HOM05D020905 ORTHO05D016076 1.2e-45 186.4 95 94.7
BolC5t33168H Brassica oleracea HOM05D014197 ORTHO05D024266 1.2e-45 186.4 95 94.7
C04p23010 Brassica napus HOM05D014197 ORTHO05D024266 1.1e-38 163.3 95 84.2
C03p36340 Brassica napus HOM05D014197 ORTHO05D016076 9.0e-17 90.5 75 64.0
BcaC04g21103 Brassica carinata HOM05D020905 ORTHO05D027581 2.0e-16 89.4 96 57.3
C09p35660 Brassica napus HOM05D020905 ORTHO05D027581 2.0e-16 89.4 96 57.3
BolC9t56402H Brassica oleracea HOM05D020905 ORTHO05D027581 2.0e-16 89.4 96 57.3
A10p25470 Brassica napus HOM05D000189 ORTHO05D000474 4.2e-14 81.6 56 69.6
BraA10t44611Z Brassica rapa HOM05D000189 ORTHO05D000474 4.2e-14 81.6 56 69.6
BcaNung03621 Brassica carinata HOM05D000189 ORTHO05D000474 1.7e-10 69.7 56 58.9
C09p64540 Brassica napus HOM05D000189 ORTHO05D000474 6.3e-10 67.8 56 58.9
BolC9t59288H Brassica oleracea HOM05D000189 ORTHO05D000474 6.3e-10 67.8 56 58.9
AL6G23150 Arabidopsis lyrata HOM05D000189 ORTHO05D000474 1.1e-09 67.0 56 57.1
AT5G12350 Arabidopsis thaliana HOM05D000189 ORTHO05D000474 1.4e-09 66.6 56 57.1
BcaNung01194 Brassica carinata HOM05D000189 ORTHO05D000474 1.4e-09 66.6 56 57.1
BcaNung03619 Brassica carinata HOM05D000189 ORTHO05D016076 1.4e-09 66.6 56 57.1
A02p01490 Brassica napus HOM05D000189 ORTHO05D000474 1.4e-09 66.6 56 57.1
C02p05720 Brassica napus HOM05D000189 ORTHO05D000474 1.4e-09 66.6 56 57.1
BolC2t06517H Brassica oleracea HOM05D000189 ORTHO05D000474 1.4e-09 66.6 56 57.1
Sp6g31290 Schrenkiella parvula HOM05D000189 ORTHO05D000474 1.4e-09 66.6 56 57.1
BraA02t05130Z Brassica rapa HOM05D000189 ORTHO05D000474 3.1e-09 65.5 56 57.1
CARHR200760 Cardamine hirsuta HOM05D000189 ORTHO05D000474 4.1e-09 65.1 56 55.4
MSTRG.17629 Avicennia marina HOM05D000189 ORTHO05D000474 9.1e-09 63.9 52 55.8
Carub.0006s1086 Capsella rubella HOM05D000189 ORTHO05D000474 9.1e-09 63.9 56 55.4
AT5G19420 Arabidopsis thaliana HOM05D000189 ORTHO05D000474 2.6e-08 62.4 75 46.7
Thhalv10012520m.g Eutrema salsugineum HOM05D000189 ORTHO05D000474 3.4e-08 62.0 42 66.7
Oeu030628.1 Olea europaea HOM05D000189 ORTHO05D000474 3.4e-08 62.0 45 60.0
CARHR193530 Cardamine hirsuta HOM05D000189 ORTHO05D000474 4.5e-08 61.6 50 56.0
arahy.Tifrunner.gnm1.ann1.4IWI24 Arachis hypogaea HOM05D000189 ORTHO05D000474 7.7e-08 60.8 50 54.0
arahy.Tifrunner.gnm1.ann1.CKNT4J Arachis hypogaea HOM05D000189 ORTHO05D000474 7.7e-08 60.8 50 54.0
Aa31LG3G14880 Aethionema arabicum HOM05D000189 ORTHO05D000474 1.0e-07 60.5 44 63.6
AL6G30910 Arabidopsis lyrata HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BcaB01g04863 Brassica carinata HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BcaB01g05151 Brassica carinata HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BcaC04g24229 Brassica carinata HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
A03p09470 Brassica napus HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
A10p20280 Brassica napus HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
C03p11050 Brassica napus HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
C09p56880 Brassica napus HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BolC3t13574H Brassica oleracea HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BolC9t58542H Brassica oleracea HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BraA03t10265Z Brassica rapa HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
BraA10t44099Z Brassica rapa HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
COL.COLO4_07309 Corchorus olitorius HOM05D000189 ORTHO05D000474 1.0e-07 60.5 107 35.5
Thhalv10012507m.g Eutrema salsugineum HOM05D000189 ORTHO05D000474 1.0e-07 60.5 39 69.2
Oeu043282.1 Olea europaea HOM05D000189 ORTHO05D000474 1.0e-07 60.5 45 57.8
Psat5g192920 Pisum sativum HOM05D000189 ORTHO05D000474 1.0e-07 60.5 45 60.0
Migut.N02367 Erythranthe guttata HOM05D000189 ORTHO05D000474 1.3e-07 60.1 45 57.8
THA.LOC104811189 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 1.3e-07 60.1 69 49.3
Peaxi162Scf00272g00091 Petunia axillaris HOM05D000189 ORTHO05D000474 1.7e-07 59.7 38 63.2
FAN11G3180 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.2e-07 59.3 53 54.7
FAN16G1546 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.2e-07 59.3 45 60.0
FAN21G3014 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.2e-07 59.3 45 60.0
MD11G1186800 Malus domestica HOM05D000189 ORTHO05D000474 2.2e-07 59.3 45 57.8
Nitab4.5_0001290g0050 Nicotiana tabacum HOM05D000189 ORTHO05D000474 2.2e-07 59.3 54 53.7
Nitab4.5_0002310g0030 Nicotiana tabacum HOM05D000189 ORTHO05D000474 2.2e-07 59.3 54 53.7
SGA_v2.0_scaffold29G12263 Striga asiatica HOM05D000189 ORTHO05D000474 2.2e-07 59.3 45 57.8
GSVIVG01037259001 Vitis vinifera HOM05D000189 ORTHO05D000474 2.9e-07 58.9 45 60.0
Solyc11g065120.3 Solanum lycopersicum HOM05D000189 ORTHO05D000474 3.8e-07 58.5 38 65.8
Solyc12g099740.2 Solanum lycopersicum HOM05D000189 ORTHO05D000474 3.8e-07 58.5 45 57.8
Sopen11g024860 Solanum pennellii HOM05D000189 ORTHO05D000474 3.8e-07 58.5 38 65.8
Sopen12g034380 Solanum pennellii HOM05D000189 ORTHO05D000474 3.8e-07 58.5 45 57.8
CAN.G575.99 Capsicum annuum HOM05D000189 ORTHO05D000474 5.0e-07 58.2 38 65.8
DCAR_023847 Daucus carota HOM05D000189 ORTHO05D000474 5.0e-07 58.2 56 50.0
FvH4_3g28000 Fragaria vesca HOM05D000189 ORTHO05D000474 5.0e-07 58.2 45 60.0
Glyma.02G280400 Glycine max HOM05D000189 ORTHO05D000474 5.0e-07 58.2 45 55.6
Glyma.14G034200 Glycine max HOM05D000189 ORTHO05D000474 5.0e-07 58.2 45 55.6
MD03G1167700 Malus domestica HOM05D000189 ORTHO05D000474 5.0e-07 58.2 45 55.6
Nitab4.5_0002726g0050 Nicotiana tabacum HOM05D000189 ORTHO05D000474 5.0e-07 58.2 38 65.8
Peaxi162Scf00004g04116 Petunia axillaris HOM05D000189 ORTHO05D000474 5.0e-07 58.2 38 65.8
Sp6g24990 Schrenkiella parvula HOM05D000189 ORTHO05D000474 5.0e-07 58.2 39 66.7
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 6.5e-07 57.8 45 57.8
Ciclev10014100m.g Citrus clementina HOM05D000189 ORTHO05D000474 6.5e-07 57.8 45 57.8
COL.COLO4_33274 Corchorus olitorius HOM05D000189 ORTHO05D000474 6.5e-07 57.8 38 65.8
Gohir.A09G109800 Gossypium hirsutum HOM05D000189 ORTHO05D000474 6.5e-07 57.8 45 55.6
Gohir.D09G106300 Gossypium hirsutum HOM05D000189 ORTHO05D000474 6.5e-07 57.8 45 55.6
Gorai.006G123800 Gossypium raimondii HOM05D000189 ORTHO05D000474 6.5e-07 57.8 45 55.6
SalBow6G3649 Salvia bowleyana HOM05D000189 ORTHO05D000474 6.5e-07 57.8 45 55.6
Thecc.09G250100 Theobroma cacao HOM05D000189 ORTHO05D000474 6.5e-07 57.8 38 65.8
Aqoxy2G00355 Aquilegia oxysepala HOM05D000189 ORTHO05D000474 8.5e-07 57.4 45 60.0
CSS0024064 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 8.5e-07 57.4 38 65.8
CAN.G1703.11 Capsicum annuum HOM05D002048 ORTHO05D002146 8.5e-07 57.4 65 43.1
Ca_25927_v3 Cicer arietinum L. HOM05D000189 ORTHO05D000474 8.5e-07 57.4 45 55.6
TPR.G8490 Trifolium pratense HOM05D000189 ORTHO05D000474 8.5e-07 57.4 45 55.6
vmacro14274 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 8.5e-07 57.4 45 55.6
Atru.chr3.2784 Acer truncatum HOM05D000189 ORTHO05D000474 1.4e-06 56.6 45 57.8
Gohir.A08G009900 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.4e-06 56.6 45 55.6
Nn7g36659 Nelumbo nucifera HOM05D000189 ORTHO05D000474 1.4e-06 56.6 45 55.6
Psat2g019360 Pisum sativum HOM05D000189 ORTHO05D000474 1.4e-06 56.6 45 55.6
PGR102G3135 Punica granatum HOM05D000189 ORTHO05D000474 1.4e-06 56.6 37 64.9
THA.LOC104799120 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 1.4e-06 56.6 67 47.8
TPR.G19343 Trifolium pratense HOM05D000189 ORTHO05D000474 1.4e-06 56.6 45 55.6
TAR636G0422 Trochodendron aralioides HOM05D000189 ORTHO05D000474 1.4e-06 56.6 44 56.8
Gohir.D08G020000 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.9e-06 56.2 45 55.6
Gorai.004G014600 Gossypium raimondii HOM05D000189 ORTHO05D000474 1.9e-06 56.2 45 55.6
Lsat_1_v5_gn_2_33921 Lactuca sativa HOM05D000189 ORTHO05D000474 1.9e-06 56.2 44 54.5
Prupe.4G268000 Prunus persica HOM05D000189 ORTHO05D000474 1.9e-06 56.2 45 55.6
RcHm_v2.0_Chr5g0050701 Rosa chinensis HOM05D000189 ORTHO05D000474 1.9e-06 56.2 45 57.8
Cc01_g05540 Coffea canephora HOM05D000189 ORTHO05D000474 2.5e-06 55.8 38 63.2
Duzib170G1060 Durio zibethinus HOM05D000189 ORTHO05D000474 2.5e-06 55.8 38 63.2
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.5e-06 55.8 43 58.1
Lj1A288T38 Lonicera japonica HOM05D000189 ORTHO05D000474 2.5e-06 55.8 44 56.8
Lj1A295G42 Lonicera japonica HOM05D000189 ORTHO05D000474 2.5e-06 55.8 44 56.8
QL01p017422 Quercus lobata HOM05D000189 ORTHO05D000474 2.5e-06 55.8 45 57.8
Sed0002027 Sechium edule HOM05D000189 ORTHO05D000474 2.5e-06 55.8 45 55.6
HPP92_003589 Vanilla planifolia HOM05D000189 ORTHO05D000474 2.5e-06 55.8 38 63.2
CANSAT54G0830 Cannabis sativa HOM05D000189 ORTHO05D000474 3.2e-06 55.5 45 55.6
ClCG03G012690 Citrullus lanatus HOM05D000189 ORTHO05D000474 3.2e-06 55.5 52 51.9
LjContig00049g0011114 Lotus japonicus HOM05D000189 ORTHO05D000474 3.2e-06 55.5 37 64.9
Medtr5g089900 Medicago truncatula HOM05D000189 ORTHO05D000474 3.2e-06 55.5 39 61.5
Rhsim01G0194500 Rhododendron simsii HOM05D000189 ORTHO05D000474 3.2e-06 55.5 45 55.6
THA.LOC104824622 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 3.2e-06 55.5 49 57.1
vmacro04020 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 3.2e-06 55.5 38 65.8
Ah.10g030420 Amaranthus hybridus HOM05D000189 ORTHO05D000474 4.2e-06 55.1 44 59.1
CAN.G1850.2 Capsicum annuum HOM05D000189 ORTHO05D000474 4.2e-06 55.1 38 63.2
SMO228G0108 Selaginella moellendorffii HOM05D000189 ORTHO05D000474 4.2e-06 55.1 51 54.9
EL10Ac4g10125 Beta vulgaris HOM05D000189 ORTHO05D000474 5.5e-06 54.7 45 53.3
CSS0018764 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 5.5e-06 54.7 45 55.6
CAN.G309.95 Capsicum annuum HOM05D002048 ORTHO05D002146 5.5e-06 54.7 35 62.9
Glyma.08G302000 Glycine max HOM05D000189 ORTHO05D000474 5.5e-06 54.7 35 68.6
Glyma.18G119000 Glycine max HOM05D000189 ORTHO05D000474 5.5e-06 54.7 35 68.6
Lalb_Chr04g0249161 Lupinus albus HOM05D000189 ORTHO05D000474 5.5e-06 54.7 45 53.3
Nitab4.5_0004018g0090 Nicotiana tabacum HOM05D000189 ORTHO05D000474 5.5e-06 54.7 36 63.9
VMungo0540G0077 Vigna mungo HOM05D000189 ORTHO05D000474 5.5e-06 54.7 35 68.6
Cpa.g.sc2800.2 Carica papaya HOM05D000189 ORTHO05D000474 7.2e-06 54.3 42 59.5
CDE09G0212 Ceratophyllum demersum HOM05D000189 ORTHO05D000474 7.2e-06 54.3 38 57.9
CsaV3_1G043270 Cucumis sativus L. HOM05D000189 ORTHO05D000474 7.2e-06 54.3 45 55.6
ECA240G1353 Erigeron canadensis HOM05D000189 ORTHO05D000474 7.2e-06 54.3 45 51.1
Hma1.2p1_0758F.1_g213525 Hydrangea macrophylla HOM05D000189 ORTHO05D000474 7.2e-06 54.3 45 53.3
Lj6g0022482 Lotus japonicus HOM05D000189 ORTHO05D000474 7.2e-06 54.3 38 63.2
Manes.01G180100 Manihot esculenta HOM05D000189 ORTHO05D000474 7.2e-06 54.3 38 60.5
Os05g0384800 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D000474 7.2e-06 54.3 45 53.3
Potri.001G276900 Populus trichocarpa HOM05D000189 ORTHO05D000474 7.2e-06 54.3 46 56.5
RcHm_v2.0_Chr1g0323931 Rosa chinensis HOM05D000189 ORTHO05D000474 7.2e-06 54.3 74 44.6
Ah.06g194480 Amaranthus hybridus HOM05D000189 ORTHO05D000474 9.4e-06 53.9 45 53.3
ATR0564G207 Amborella trichopoda HOM05D000189 ORTHO05D000474 9.4e-06 53.9 57 47.4
EL10Ac4g10164 Beta vulgaris HOM05D000189 ORTHO05D000474 9.4e-06 53.9 45 53.3
AUR62006531 Chenopodium quinoa HOM05D000189 ORTHO05D000474 9.4e-06 53.9 45 53.3
Duzib150G0557 Durio zibethinus HOM05D000189 ORTHO05D000474 9.4e-06 53.9 38 63.2
Potri.001G026900 Populus trichocarpa HOM05D000189 ORTHO05D000474 9.4e-06 53.9 44 56.8
Prupe.2G034600 Prunus persica HOM05D000189 ORTHO05D000474 9.4e-06 53.9 44 59.1


User provided reference genes

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