Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-147 526.6 243 100.0
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.0e-147 526.6 243 100.0
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.0e-147 526.6 243 100.0
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 3.0e-147 525.0 243 99.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 8.8e-147 523.5 243 99.2
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 8.3e-145 516.9 243 98.8
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-144 516.5 243 98.8
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-144 516.5 243 98.8
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.1e-144 516.5 243 98.8
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.4e-144 516.2 243 98.4
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.4e-144 516.2 243 98.4
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-144 515.8 243 98.4
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.8e-144 515.8 243 98.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.1e-144 514.6 243 97.9
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.1e-144 514.6 243 97.9
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 5.9e-143 510.8 243 97.1
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.3e-142 509.6 243 97.1
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.0e-140 500.4 243 93.8
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.0e-139 500.0 247 95.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.2e-138 496.5 243 92.6
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.2e-138 496.5 243 92.2
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.4e-138 495.0 243 90.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 5.7e-138 494.2 243 90.5
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 7.5e-138 493.8 243 90.5
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.7e-137 491.5 243 89.3
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 6.3e-137 490.7 243 91.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 8.3e-137 490.3 243 91.4
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 8.3e-137 490.3 245 89.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.1e-136 490.0 243 90.5
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.4e-136 489.6 243 90.5
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.4e-136 489.6 243 90.5
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.8e-136 489.2 243 89.7
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.8e-136 489.2 243 90.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.4e-136 488.8 243 89.7
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.4e-136 488.8 243 89.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.4e-136 488.8 243 89.7
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.1e-136 488.4 243 90.5
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.1e-136 488.0 243 90.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.1e-136 488.0 243 89.3
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.1e-136 488.0 243 91.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.1e-136 488.0 243 91.8
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 4.1e-136 488.0 243 90.9
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.4e-136 487.6 243 89.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 5.4e-136 487.6 243 90.5
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.4e-136 487.6 243 91.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.0e-136 487.3 243 89.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 7.0e-136 487.3 243 90.9
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 9.2e-136 486.9 244 89.8
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 9.2e-136 486.9 243 90.5
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.2e-136 486.9 243 89.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 9.2e-136 486.9 243 89.7
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 2.0e-135 485.7 243 89.7
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.7e-135 485.3 243 90.5
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.5e-135 485.0 245 89.4
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 3.5e-135 485.0 243 91.8
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 3.5e-135 485.0 244 89.3
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 3.5e-135 485.0 242 90.5
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 3.5e-135 485.0 242 90.5
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 4.5e-135 484.6 243 89.3
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 4.5e-135 484.6 246 89.8
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 4.5e-135 484.6 243 88.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.5e-135 484.6 243 90.5
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 5.9e-135 484.2 243 89.7
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 5.9e-135 484.2 249 88.0
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.0e-134 483.4 243 89.3
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.0e-134 483.4 243 90.9
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.0e-134 483.4 243 89.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.0e-134 483.4 243 88.9
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.3e-134 483.0 242 89.3
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.9e-134 481.9 243 89.3
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 2.9e-134 481.9 243 89.7
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.0e-134 481.1 243 89.3
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 8.6e-134 480.3 243 89.3
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.1e-133 479.9 243 90.1
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.5e-133 479.6 242 88.4
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.9e-133 479.2 243 89.3
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.9e-133 479.2 242 88.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.6e-132 476.1 243 88.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.1e-132 475.7 247 87.9
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.6e-132 474.9 220 100.0
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 3.6e-132 474.9 220 100.0
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.7e-132 474.6 249 86.7
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.1e-132 474.2 243 88.5
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 6.1e-132 474.2 243 87.2
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 8.0e-132 473.8 242 87.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.0e-131 473.4 251 85.7
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 3.1e-131 471.9 247 87.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 3.1e-131 471.9 246 88.6
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 3.1e-131 471.9 250 84.4
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.0e-131 471.5 243 87.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 8.9e-131 470.3 245 87.3
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 8.9e-131 470.3 248 85.9
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 8.9e-131 470.3 243 86.0
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.2e-130 469.9 240 87.9
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.2e-130 469.9 244 88.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 5.8e-130 467.6 244 85.7
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 7.5e-130 467.2 243 86.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.4e-128 463.0 243 84.8
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.9e-128 462.6 271 79.3
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.4e-128 461.1 243 86.4
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.6e-127 459.5 244 86.1
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-127 459.5 243 86.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 4.6e-127 458.0 273 77.7
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 8.6e-126 453.8 243 85.6
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.2e-124 449.9 303 71.3
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 8.0e-124 447.2 226 88.5
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 3.7e-121 438.3 220 89.1
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.4e-120 435.6 220 90.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.1e-120 434.9 245 80.0
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.2e-119 433.3 244 80.3
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.7e-119 432.2 217 88.9
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.6e-118 427.2 245 78.4
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-117 426.8 244 78.7
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.5e-117 426.4 220 86.8
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.9e-117 426.0 220 88.2
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.6e-117 424.5 242 78.5
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.4e-114 415.2 247 78.1
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 6.4e-113 411.0 248 79.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 4.1e-112 408.3 401 53.9
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.0e-110 403.7 243 77.8
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.0e-110 402.1 396 53.8
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.3e-109 398.3 449 48.3
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.1e-104 383.6 212 85.4
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.1e-99 367.1 243 68.3
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.6e-93 344.0 246 63.0
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 9.6e-93 344.0 242 65.3
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.6e-92 343.2 180 86.7
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 8.4e-89 330.9 245 68.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.1e-79 299.7 244 57.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-76 290.4 145 89.7
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.8e-76 289.3 228 57.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.1e-75 285.8 151 84.1
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.7e-71 272.7 145 84.8
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.4e-67 260.4 243 52.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 3.8e-65 252.3 127 90.6
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.4e-58 229.2 117 87.2
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.8e-54 216.9 226 46.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.5e-53 213.8 228 43.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.6e-53 213.0 269 40.1
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 9.7e-53 211.1 251 42.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-52 210.7 107 87.9
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.1e-51 207.6 247 41.7
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 7.0e-51 204.9 244 43.9
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.8e-49 199.1 235 42.1
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 5.3e-43 178.7 89 88.8
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.1e-40 171.0 240 38.3
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-26 124.0 120 55.0
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.6e-23 114.0 157 43.9
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.6e-23 114.0 56 87.5
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 4.4e-21 105.9 104 53.8
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.7e-18 96.7 56 83.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 3.1e-14 83.2 49 73.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 5.4e-11 72.4 33 84.8
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 3.0e-09 66.6 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.6e-07 60.8 43 62.8
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 8.9e-06 55.1 32 78.1


User provided reference genes

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