Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41945 Brassica carinata HOM05D001988 ORTHO05D019859 1.8e-72 275.8 134 100.0
C08p50020 Brassica napus HOM05D001988 ORTHO05D019859 1.1e-69 266.5 136 96.3
BraA09t41936Z Brassica rapa HOM05D001988 ORTHO05D019859 3.1e-61 238.4 143 82.5
BcaC07g42533 Brassica carinata HOM05D001988 ORTHO05D006298 1.3e-59 233.0 138 84.8
BcaB03g13337 Brassica carinata HOM05D001988 ORTHO05D006298 1.2e-57 226.5 139 81.3
AL1G18820 Arabidopsis lyrata HOM05D001988 ORTHO05D006298 1.0e-56 223.4 138 80.4
Thhalv10007194m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 1.0e-56 223.4 138 81.9
AT1G08410 Arabidopsis thaliana HOM05D001988 ORTHO05D006298 1.8e-56 222.6 138 80.4
Sp1g07060 Schrenkiella parvula HOM05D001988 ORTHO05D006298 1.8e-56 222.6 139 80.6
Carub.0001s0776 Capsella rubella HOM05D001988 ORTHO05D006298 4.0e-56 221.5 138 79.7
BcaC07g38386 Brassica carinata HOM05D001988 ORTHO05D006298 1.3e-54 216.5 138 79.7
A08p35180 Brassica napus HOM05D001988 ORTHO05D006298 1.3e-54 216.5 138 79.7
C08p11420 Brassica napus HOM05D001988 ORTHO05D006298 1.3e-54 216.5 138 79.7
BolC8t48823H Brassica oleracea HOM05D001988 ORTHO05D006298 1.3e-54 216.5 138 79.7
BraA08t35427Z Brassica rapa HOM05D001988 ORTHO05D006298 1.3e-54 216.5 138 79.7
CARHR008290 Cardamine hirsuta HOM05D001988 ORTHO05D006298 3.1e-53 211.8 138 76.8
Aa31sc314G30 Aethionema arabicum HOM05D001988 ORTHO05D006298 7.7e-52 207.2 138 76.1
THA.LOC104826449 Tarenaya hassleriana HOM05D001988 ORTHO05D006298 7.7e-52 207.2 138 76.8
CARHR119700 Cardamine hirsuta HOM05D001988 ORTHO05D006298 1.5e-50 203.0 135 77.0
Thhalv10001955m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 1.5e-50 203.0 135 77.8
AT2G27200 Arabidopsis thaliana HOM05D001988 ORTHO05D006298 4.2e-50 201.4 135 77.8
Carub.0004s0777 Capsella rubella HOM05D001988 ORTHO05D006298 5.5e-50 201.1 135 77.8
Sp4g10000 Schrenkiella parvula HOM05D001988 ORTHO05D006298 7.2e-50 200.7 135 77.0
AL4G21100 Arabidopsis lyrata HOM05D001988 ORTHO05D006298 1.6e-49 199.5 135 77.0
BcaB06g28123 Brassica carinata HOM05D001988 ORTHO05D006298 3.0e-48 195.3 136 76.5
Aa31LG5G8630 Aethionema arabicum HOM05D001988 ORTHO05D006298 5.2e-48 194.5 135 75.6
COL.COLO4_25404 Corchorus olitorius HOM05D001988 ORTHO05D006298 2.0e-47 192.6 138 69.6
Gohir.A09G100300 Gossypium hirsutum HOM05D001988 ORTHO05D006298 2.6e-47 192.2 138 69.6
Gohir.D09G099700 Gossypium hirsutum HOM05D001988 ORTHO05D006298 4.4e-47 191.4 138 71.0
Gohir.D09G099766 Gossypium hirsutum HOM05D001988 ORTHO05D006298 4.4e-47 191.4 138 71.0
Gorai.006G116700 Gossypium raimondii HOM05D001988 ORTHO05D006298 1.3e-46 189.9 138 70.3
A04p20690 Brassica napus HOM05D001988 ORTHO05D006298 2.2e-46 189.1 139 71.2
BraA04t17642Z Brassica rapa HOM05D001988 ORTHO05D006298 2.2e-46 189.1 139 71.2
BcaC02g08272 Brassica carinata HOM05D001988 ORTHO05D006298 2.8e-46 188.7 139 71.2
C04p56520 Brassica napus HOM05D001988 ORTHO05D006298 2.8e-46 188.7 139 71.2
BolC4t27178H Brassica oleracea HOM05D001988 ORTHO05D006298 2.8e-46 188.7 139 71.2
Thecc.09G271000 Theobroma cacao HOM05D001988 ORTHO05D006298 3.1e-45 185.3 138 66.7
QL01p019440 Quercus lobata HOM05D001988 ORTHO05D006298 5.4e-45 184.5 138 68.1
Potri.009G017000 Populus trichocarpa HOM05D001988 ORTHO05D006298 9.1e-45 183.7 135 68.9
Cpa.g.sc103.19 Carica papaya HOM05D001988 ORTHO05D006298 1.6e-44 183.0 138 66.7
Duzib168G1815 Durio zibethinus HOM05D001988 ORTHO05D006298 2.0e-44 182.6 135 67.4
Glyma.11G175746 Glycine max HOM05D001988 ORTHO05D006298 1.7e-43 179.5 138 65.9
Glyma.12G095400 Glycine max HOM05D001988 ORTHO05D006298 1.7e-43 179.5 138 65.9
FvH4_3g26290 Fragaria vesca HOM05D001988 ORTHO05D006298 2.9e-43 178.7 138 65.2
FAN21G2899 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.9e-43 178.7 138 65.2
Lj3g0025777 Lotus japonicus HOM05D001988 ORTHO05D006298 3.8e-43 178.3 139 64.7
Prupe.1G535500 Prunus persica HOM05D001988 ORTHO05D006298 3.8e-43 178.3 134 66.4
RcHm_v2.0_Chr5g0048681 Rosa chinensis HOM05D001988 ORTHO05D006298 5.0e-43 177.9 138 65.2
Lalb_Chr19g0136211 Lupinus albus HOM05D001988 ORTHO05D006298 8.6e-43 177.2 138 64.5
Sabra09G0009700 Salix brachista HOM05D001988 ORTHO05D006298 1.5e-42 176.4 135 66.7
Dinv33543 Davidia involucrata HOM05D001988 ORTHO05D006298 1.9e-42 176.0 138 65.2
Manes.04G062600 Manihot esculenta HOM05D001988 ORTHO05D006298 1.9e-42 176.0 135 66.7
MD05G1034700 Malus domestica HOM05D001988 ORTHO05D006298 2.5e-42 175.6 134 67.2
PGR119G1622 Punica granatum HOM05D001988 ORTHO05D006298 3.3e-42 175.3 138 63.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.2e-42 174.9 149 61.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.2e-42 174.9 149 60.4
VMungo1127G1842 Vigna mungo HOM05D001988 ORTHO05D006298 5.6e-42 174.5 138 65.2
Ciclev10028074m.g Citrus clementina HOM05D001988 ORTHO05D006298 7.2e-42 174.1 138 63.8
TAR636G0458 Trochodendron aralioides HOM05D001988 ORTHO05D006298 7.2e-42 174.1 138 63.0
Atru.chr3.3098 Acer truncatum HOM05D001988 ORTHO05D006298 9.5e-42 173.7 138 64.5
Cfa010182 Carpinus fangiana HOM05D001988 ORTHO05D006298 9.5e-42 173.7 138 67.4
Lalb_Chr03g0028461 Lupinus albus HOM05D001988 ORTHO05D006298 9.5e-42 173.7 138 63.8
Nn6g34638 Nelumbo nucifera HOM05D001988 ORTHO05D006298 9.5e-42 173.7 138 64.5
Phvul.011G099700 Phaseolus vulgaris HOM05D001988 ORTHO05D006298 1.2e-41 173.3 142 64.1
Atru.chr3.3101 Acer truncatum HOM05D001988 ORTHO05D006298 1.6e-41 172.9 138 64.5
CiPaw.13G129100 Carya illinoinensis HOM05D001988 ORTHO05D006298 1.6e-41 172.9 138 67.4
TPR.G4623 Trifolium pratense HOM05D001988 ORTHO05D006298 2.8e-41 172.2 138 64.5
Actinidia07284 Actinidia chinensis HOM05D001988 ORTHO05D006298 3.6e-41 171.8 138 63.8
Medtr4g050490 Medicago truncatula HOM05D001988 ORTHO05D006298 3.6e-41 171.8 138 64.5
Sed0023260 Sechium edule HOM05D001988 ORTHO05D006298 3.6e-41 171.8 138 63.8
CANSAT54G0076 Cannabis sativa HOM05D001988 ORTHO05D006298 4.7e-41 171.4 138 65.2
BolC8t52532H Brassica oleracea HOM05D001988 ORTHO05D019859 6.1e-41 171.0 131 68.7
EL10Ac7g16285 Beta vulgaris HOM05D001988 ORTHO05D006298 8.0e-41 170.6 138 65.2
Eucgr.J00579 Eucalyptus grandis HOM05D001988 ORTHO05D006298 8.0e-41 170.6 139 64.0
AUR62020220 Chenopodium quinoa HOM05D001988 ORTHO05D006298 1.0e-40 170.2 137 66.4
Psat7g204840 Pisum sativum HOM05D001988 ORTHO05D006298 1.4e-40 169.9 138 64.5
Rhsim13G0196900 Rhododendron simsii HOM05D001988 ORTHO05D006298 1.8e-40 169.5 137 65.7
Actinidia24258 Actinidia chinensis HOM05D001988 ORTHO05D006298 2.3e-40 169.1 138 63.0
AUR62001563 Chenopodium quinoa HOM05D001988 ORTHO05D006298 2.3e-40 169.1 139 64.7
vmacro03951 Vaccinium macrocarpon HOM05D001988 ORTHO05D006298 2.3e-40 169.1 135 65.9
Cc01_g07790 Coffea canephora HOM05D001988 ORTHO05D006298 3.0e-40 168.7 138 63.8
Ca_02972_v3 Cicer arietinum L. HOM05D001988 ORTHO05D006298 4.0e-40 168.3 138 63.8
Hma1.2p1_0101F.1_g049570 Hydrangea macrophylla HOM05D001988 ORTHO05D006298 5.2e-40 167.9 138 63.0
MELO3C008925.2 Cucumis melo HOM05D001988 ORTHO05D006298 6.8e-40 167.5 138 61.6
CsaV3_4G030600 Cucumis sativus L. HOM05D001988 ORTHO05D006298 6.8e-40 167.5 138 61.6
Aqoxy2G00626 Aquilegia oxysepala HOM05D001988 ORTHO05D006298 8.9e-40 167.2 135 69.6
arahy.Tifrunner.gnm1.ann1.JS7C8X Arachis hypogaea HOM05D001988 ORTHO05D006298 8.9e-40 167.2 138 62.3
Os03g0647500 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D019859 8.9e-40 167.2 138 65.2
MD10G1037500 Malus domestica HOM05D001988 ORTHO05D006298 1.2e-39 166.8 143 61.5
Os12g0618300 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D006298 1.2e-39 166.8 138 63.8
HanXRQChr14g0431711 Helianthus annuus HOM05D001988 ORTHO05D006298 1.5e-39 166.4 138 63.8
HPP92_017674 Vanilla planifolia HOM05D001988 ORTHO05D006298 1.5e-39 166.4 137 63.5
ClCG04G002140 Citrullus lanatus HOM05D001988 ORTHO05D006298 2.0e-39 166.0 138 63.0
Nitab4.5_0002792g0050 Nicotiana tabacum HOM05D001988 ORTHO05D006298 3.4e-39 165.2 138 63.0
Ah.15g092110 Amaranthus hybridus HOM05D001988 ORTHO05D006298 4.4e-39 164.9 138 63.0
CSS0034246 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D006298 4.4e-39 164.9 135 63.7
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 4.4e-39 164.9 136 63.2
Hund18799 Selenicereus undatus HOM05D001988 ORTHO05D006298 5.7e-39 164.5 138 63.0
Migut.N02439 Erythranthe guttata HOM05D001988 ORTHO05D006298 9.8e-39 163.7 135 64.4
PSO384G2941 Papaver somniferum HOM05D001988 ORTHO05D006298 9.8e-39 163.7 135 66.7
Glyma.13G312200 Glycine max HOM05D001988 ORTHO05D006298 1.3e-38 163.3 138 60.1
Glyma.12G189600 Glycine max HOM05D001988 ORTHO05D006298 2.2e-38 162.5 138 60.1
PSO339G1785 Papaver somniferum HOM05D001988 ORTHO05D006298 2.2e-38 162.5 135 65.9
Sed0009678 Sechium edule HOM05D001988 ORTHO05D006298 2.2e-38 162.5 140 63.6
Migut.G01069 Erythranthe guttata HOM05D001988 ORTHO05D006298 2.9e-38 162.2 135 64.4
CDE06G0259 Ceratophyllum demersum HOM05D001988 ORTHO05D006298 4.9e-38 161.4 106 77.4
GSVIVG01037592001 Vitis vinifera HOM05D001988 ORTHO05D006298 4.9e-38 161.4 114 72.8
MSTRG.17675 Avicennia marina HOM05D001988 ORTHO05D006298 6.4e-38 161.0 138 63.0
CsaV3_1G015690 Cucumis sativus L. HOM05D001988 ORTHO05D006298 6.4e-38 161.0 138 60.1
Solyc11g071910.2 Solanum lycopersicum HOM05D001988 ORTHO05D006298 6.4e-38 161.0 138 62.3
Sopen11g029580 Solanum pennellii HOM05D001988 ORTHO05D006298 6.4e-38 161.0 138 62.3
Peaxi162Scf00429g00122 Petunia axillaris HOM05D001988 ORTHO05D006298 1.4e-37 159.8 138 62.3
ATR0006G002 Amborella trichopoda HOM05D001988 ORTHO05D006298 1.8e-37 159.5 115 69.6
MELO3C026106.2 Cucumis melo HOM05D001988 ORTHO05D006298 1.8e-37 159.5 138 58.7
Sc21g0006750 Simmondsia chinensis HOM05D001988 ORTHO05D006298 1.8e-37 159.5 138 62.3
DCAR_006456 Daucus carota HOM05D001988 ORTHO05D006298 2.4e-37 159.1 138 60.9
PGSC0003DMG400003001 Solanum tuberosum HOM05D001988 ORTHO05D006298 2.4e-37 159.1 138 61.6
Zm00001eb031980 Zea mays HOM05D001988 ORTHO05D006298 2.4e-37 159.1 111 71.2
ECA238G3826 Erigeron canadensis HOM05D001988 ORTHO05D006298 3.2e-37 158.7 109 74.3
Oeu051473.1 Olea europaea HOM05D001988 ORTHO05D006298 3.2e-37 158.7 111 72.1
arahy.Tifrunner.gnm1.ann1.Q3UIYI Arachis hypogaea HOM05D001988 ORTHO05D006298 5.4e-37 157.9 111 70.3
Haze_23572 Corylus avellana HOM05D001988 ORTHO05D006298 9.2e-37 157.1 182 51.6
Lsat_1_v5_gn_2_35440 Lactuca sativa HOM05D001988 ORTHO05D006298 9.2e-37 157.1 109 72.5
ClCG01G010890 Citrullus lanatus HOM05D001988 ORTHO05D006298 1.2e-36 156.8 152 53.9
SGA_v2.0_scaffold268G46203 Striga asiatica HOM05D001988 ORTHO05D006298 3.9e-35 151.8 141 60.3
Pp3c3_21040 Physcomitrium patens HOM05D001988 ORTHO05D006298 7.3e-34 147.5 138 54.3
unitig_699.g19173 Utricularia gibba HOM05D001988 ORTHO05D006298 2.1e-33 146.0 106 70.8
SEGI_23026 Sequoiadendron giganteum HOM05D001988 ORTHO05D006298 4.7e-33 144.8 109 68.8
SMO174G0010 Selaginella moellendorffii HOM05D001988 ORTHO05D006298 1.8e-32 142.9 140 52.9
MBI12_g38624_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D006298 8.9e-32 140.6 134 58.2
Mapoly0045s0113 Marchantia polymorpha HOM05D001988 ORTHO05D006298 1.5e-31 139.8 109 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3830 Anthoceros agrestis HOM05D001988 ORTHO05D006298 5.8e-31 137.9 109 63.3
Dinv18851 Davidia involucrata HOM05D001988 ORTHO05D006298 9.8e-31 137.1 94 73.4
MCO12G197 Micromonas commoda HOM05D001988 ORTHO05D006298 7.3e-26 120.9 114 53.5
CBR_g32036 Chara braunii HOM05D001988 ORTHO05D006298 1.2e-25 120.2 106 58.5
PRCOL_00001880 Prasinoderma coloniale HOM05D001988 ORTHO05D006298 6.4e-22 107.8 116 50.9
Cre16.g680944 Chlamydomonas reinhardtii HOM05D001988 ORTHO05D006298 1.1e-21 107.1 101 55.4
Nitab4.5_0007630g0020 Nicotiana tabacum HOM05D001988 ORTHO05D006298 2.4e-21 105.9 133 47.4
SalBow3G3263 Salvia bowleyana HOM05D001988 ORTHO05D006298 7.8e-20 100.9 135 46.7
Cfa024445 Carpinus fangiana HOM05D001988 ORTHO05D006298 3.9e-19 98.6 102 50.0
Actinidia37501 Actinidia chinensis HOM05D001988 ORTHO05D006298 6.6e-19 97.8 53 86.8
A09p65920 Brassica napus HOM05D001988 ORTHO05D019859 2.5e-18 95.9 60 83.3
Lj2A953T34 Lonicera japonica HOM05D001988 ORTHO05D006298 2.0e-15 86.3 101 50.5
HPP92_017737 Vanilla planifolia HOM05D001988 ORTHO05D036382 4.9e-14 81.6 79 51.9
BcaC03g16925 Brassica carinata HOM05D001988 ORTHO05D039682 8.6e-11 70.9 46 76.1
Duzib170G0073 Durio zibethinus HOM05D001988 ORTHO05D006298 3.6e-09 65.5 74 54.1
Glyma.07G176900 Glycine max HOM05D001988 ORTHO05D006298 8.1e-09 64.3 35 82.9
Os05g0580800 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D301116 4.0e-08 62.0 33 84.8
HanXRQChr14g0444911 Helianthus annuus HOM05D001988 ORTHO05D036382 7.6e-07 57.8 40 65.0
Aa31LG5G17610 Aethionema arabicum HOM05D003690 ORTHO05D004920 1.3e-06 57.0 122 35.2
C02p48260 Brassica napus HOM05D001988 ORTHO05D039682 2.2e-06 56.2 46 60.9
Cre12.g533050 Chlamydomonas reinhardtii HOM05D003690 ORTHO05D004920 2.2e-06 56.2 66 43.9
MCO05G546 Micromonas commoda HOM05D001988 ORTHO05D269840 2.2e-06 56.2 70 44.3
Haze_26317 Corylus avellana HOM05D001988 ORTHO05D044791 3.8e-06 55.5 76 42.1
Cre13.g577800 Chlamydomonas reinhardtii HOM05D001988 ORTHO05D146628 6.4e-06 54.7 72 44.4
SMO147G0351 Selaginella moellendorffii HOM05D003690 ORTHO05D004920 6.4e-06 54.7 66 43.9


User provided reference genes

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