Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40978 Brassica carinata HOM05D000268 ORTHO05D027468 5.5e-282 973.8 544 100.0
Thhalv10000012m.g Eutrema salsugineum HOM05D000268 ORTHO05D004469 3.5e-127 459.5 908 38.1
BcaB06g27931 Brassica carinata HOM05D000268 ORTHO05D004469 1.6e-119 434.1 897 37.3
AL4G13740 Arabidopsis lyrata HOM05D000268 ORTHO05D004469 1.4e-115 421.0 922 35.5
BcaC02g08548 Brassica carinata HOM05D000268 ORTHO05D004469 6.9e-115 418.7 899 36.2
C04p53050 Brassica napus HOM05D000268 ORTHO05D004469 6.9e-115 418.7 899 36.2
BolC4t26866H Brassica oleracea HOM05D000268 ORTHO05D004469 6.9e-115 418.7 899 36.2
AT2G23740 Arabidopsis thaliana HOM05D000268 ORTHO05D004469 9.9e-114 414.8 918 35.3
A04p18100 Brassica napus HOM05D000268 ORTHO05D004469 2.1e-111 407.1 899 35.5
BraA04t17428Z Brassica rapa HOM05D000268 ORTHO05D004469 4.6e-111 406.0 898 35.4
Carub.0004s0292 Capsella rubella HOM05D000268 ORTHO05D004469 1.4e-107 394.4 909 34.4
CARHR114610 Cardamine hirsuta HOM05D000268 ORTHO05D004469 1.8e-102 377.5 569 43.6
Sp4g02670 Schrenkiella parvula HOM05D000268 ORTHO05D004469 2.3e-102 377.1 800 36.6
Aa31LG7G13140 Aethionema arabicum HOM05D000268 ORTHO05D004469 3.1e-99 366.7 884 32.9
THA.LOC104807561 Tarenaya hassleriana HOM05D000268 ORTHO05D004469 3.3e-93 346.7 916 31.3
MSTRG.23812 Avicennia marina HOM05D000268 ORTHO05D004469 4.5e-58 229.9 652 28.2
A09p56810 Brassica napus HOM05D000268 ORTHO05D004469 7.2e-56 222.6 483 36.9
SalBow1G1781 Salvia bowleyana HOM05D000268 ORTHO05D004469 7.2e-56 222.6 914 24.7
BraA09t41070Z Brassica rapa HOM05D000268 ORTHO05D004469 5.4e-51 206.5 441 34.9
SGA_v2.0_scaffold15G07183 Striga asiatica HOM05D000268 ORTHO05D004469 2.3e-46 191.0 610 27.4
Oeu027318.1 Olea europaea HOM05D000268 ORTHO05D004469 6.8e-46 189.5 487 31.6
Oeu027319.1 Olea europaea HOM05D000268 ORTHO05D004469 1.2e-45 188.7 487 31.6
COL.COLO4_22162 Corchorus olitorius HOM05D000268 ORTHO05D004469 2.4e-43 181.0 645 26.7
MD02G1157000 Malus domestica HOM05D000268 ORTHO05D004469 1.2e-39 168.7 605 26.4
Duzib264G0212 Durio zibethinus HOM05D000268 ORTHO05D004469 6.1e-39 166.4 602 26.9
C08p39770 Brassica napus HOM05D000268 ORTHO05D027468 1.0e-38 165.6 140 67.9
BolC8t51549H Brassica oleracea HOM05D000268 ORTHO05D027468 1.0e-38 165.6 140 67.9
Thecc.01G044200 Theobroma cacao HOM05D000268 ORTHO05D004469 1.4e-38 165.2 598 26.4
GSVIVG01019046001 Vitis vinifera HOM05D000268 ORTHO05D004469 2.3e-38 164.5 807 25.8
Prupe.7G146600 Prunus persica HOM05D000268 ORTHO05D004469 5.2e-38 163.3 615 27.0
QL06p044462 Quercus lobata HOM05D000268 ORTHO05D004469 1.5e-37 161.8 610 27.4
Sabra05G0105100 Salix brachista HOM05D000268 ORTHO05D004469 7.5e-37 159.5 628 26.0
FvH4_1g14350 Fragaria vesca HOM05D000268 ORTHO05D004469 1.7e-36 158.3 613 26.4
Manes.13G134300 Manihot esculenta HOM05D000268 ORTHO05D004469 2.2e-36 157.9 613 26.3
Cpa.g.sc15.107 Carica papaya HOM05D000268 ORTHO05D004469 2.9e-36 157.5 613 26.9
FAN23G1146 Fragaria x ananassa HOM05D000268 ORTHO05D004469 3.7e-36 157.1 613 26.4
FAN19G2782 Fragaria x ananassa HOM05D000268 ORTHO05D004469 4.9e-36 156.8 613 26.4
Potri.005G129800 Populus trichocarpa HOM05D000268 ORTHO05D004469 4.9e-36 156.8 617 26.4
FAN28G1810 Fragaria x ananassa HOM05D000268 ORTHO05D004469 6.4e-36 156.4 613 26.3
CANSAT01G2579 Cannabis sativa HOM05D000268 ORTHO05D004469 8.3e-36 156.0 662 26.4
Dinv39934 Davidia involucrata HOM05D000268 ORTHO05D004469 8.3e-36 156.0 619 25.8
Gorai.003G018700 Gossypium raimondii HOM05D000268 ORTHO05D004469 1.1e-35 155.6 603 26.0
EL10Ac6g14864 Beta vulgaris HOM05D000268 ORTHO05D004469 1.4e-35 155.2 606 26.1
Gorai.003G018800 Gossypium raimondii HOM05D000268 ORTHO05D004469 2.4e-35 154.5 611 25.9
FAN26G3224 Fragaria x ananassa HOM05D000268 ORTHO05D004469 3.2e-35 154.1 613 26.1
unitig_736.g22253 Utricularia gibba HOM05D000268 ORTHO05D004469 3.2e-35 154.1 616 25.6
Glyma.01G180100 Glycine max HOM05D000268 ORTHO05D004469 7.0e-35 152.9 625 26.1
CiPaw.02G013900 Carya illinoinensis HOM05D000268 ORTHO05D004469 1.2e-34 152.1 607 26.5
Hund14126 Selenicereus undatus HOM05D000268 ORTHO05D004469 1.2e-34 152.1 588 26.2
Actinidia12097 Actinidia chinensis HOM05D000268 ORTHO05D004469 1.6e-34 151.8 618 25.9
Potri.007G033000 Populus trichocarpa HOM05D000268 ORTHO05D004469 1.6e-34 151.8 613 26.1
RcHm_v2.0_Chr2g0103021 Rosa chinensis HOM05D000268 ORTHO05D004469 1.6e-34 151.8 613 25.9
Gohir.D03G018200 Gossypium hirsutum HOM05D000268 ORTHO05D004469 2.0e-34 151.4 603 26.0
Gohir.A02G162200 Gossypium hirsutum HOM05D000268 ORTHO05D004469 5.9e-34 149.8 618 25.2
PGR102G2765 Punica granatum HOM05D000268 ORTHO05D004469 5.9e-34 149.8 595 26.6
MD15G1271600 Malus domestica HOM05D000268 ORTHO05D004469 7.8e-34 149.4 609 26.6
AUR62003214 Chenopodium quinoa HOM05D000268 ORTHO05D004469 1.3e-33 148.7 605 26.0
MELO3C007503.2 Cucumis melo HOM05D000268 ORTHO05D004469 1.3e-33 148.7 613 26.8
VMungo1215G1516 Vigna mungo HOM05D000268 ORTHO05D004469 1.7e-33 148.3 627 26.2
arahy.Tifrunner.gnm1.ann1.ISY5ET Arachis hypogaea HOM05D000268 ORTHO05D004469 2.9e-33 147.5 653 26.8
Actinidia36535 Actinidia chinensis HOM05D000268 ORTHO05D004469 3.9e-33 147.1 621 25.4
Gohir.A02G162100 Gossypium hirsutum HOM05D000268 ORTHO05D004469 3.9e-33 147.1 611 25.2
Atru.chr3.488 Acer truncatum HOM05D000268 ORTHO05D004469 8.6e-33 146.0 589 26.1
Glyma.11G062100 Glycine max HOM05D000268 ORTHO05D004469 8.6e-33 146.0 630 26.0
CSS0040273 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D004469 1.1e-32 145.6 626 24.6
Haze_15153 Corylus avellana HOM05D000268 ORTHO05D004469 1.1e-32 145.6 607 26.5
Phvul.002G024600 Phaseolus vulgaris HOM05D000268 ORTHO05D004469 1.5e-32 145.2 627 26.0
CSS0018552 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D004469 1.9e-32 144.8 626 24.4
Migut.H00513 Erythranthe guttata HOM05D000268 ORTHO05D004469 1.9e-32 144.8 581 26.0
Gohir.D03G018300 Gossypium hirsutum HOM05D000268 ORTHO05D004469 1.9e-32 144.8 611 25.4
Lj7C14G2 Lonicera japonica HOM05D000268 ORTHO05D004469 3.3e-32 144.1 598 25.3
CsaV3_6G042640 Cucumis sativus L. HOM05D000268 ORTHO05D004469 5.6e-32 143.3 613 25.9
Eucgr.H01928 Eucalyptus grandis HOM05D000268 ORTHO05D004469 5.6e-32 143.3 608 26.0
Duzib187G0333 Durio zibethinus HOM05D000268 ORTHO05D004469 1.2e-31 142.1 597 26.3
Ciclev10024695m.g Citrus clementina HOM05D000268 ORTHO05D004469 2.1e-31 141.4 625 25.1
Nitab4.5_0004932g0040 Nicotiana tabacum HOM05D000268 ORTHO05D004469 2.1e-31 141.4 615 26.2
ClCG01G016320 Citrullus lanatus HOM05D000268 ORTHO05D004469 3.6e-31 140.6 624 24.7
TWI73G0223 Tripterygium wilfordii HOM05D000268 ORTHO05D004469 3.6e-31 140.6 615 26.0
Aqoxy5G01732 Aquilegia oxysepala HOM05D000268 ORTHO05D004469 4.7e-31 140.2 597 25.0
arahy.Tifrunner.gnm1.ann1.12AQES Arachis hypogaea HOM05D000268 ORTHO05D004469 1.0e-30 139.0 641 25.9
Sabra07G0028900 Salix brachista HOM05D000268 ORTHO05D004469 1.0e-30 139.0 612 25.7
Sopen02g034660 Solanum pennellii HOM05D000268 ORTHO05D004469 1.0e-30 139.0 631 25.0
AUR62008036 Chenopodium quinoa HOM05D000268 ORTHO05D004469 1.4e-30 138.7 605 25.3
Rhsim10G0122500 Rhododendron simsii HOM05D000268 ORTHO05D004469 1.4e-30 138.7 626 24.6
Nitab4.5_0000483g0060 Nicotiana tabacum HOM05D000268 ORTHO05D004469 1.8e-30 138.3 629 25.9
Lj2g0022074 Lotus japonicus HOM05D000268 ORTHO05D004469 2.3e-30 137.9 622 25.1
CiPaw.01G030400 Carya illinoinensis HOM05D000268 ORTHO05D004469 4.0e-30 137.1 610 25.9
Solyc02g089970.3 Solanum lycopersicum HOM05D000268 ORTHO05D004469 4.0e-30 137.1 631 24.4
Peaxi162Scf00535g00417 Petunia axillaris HOM05D000268 ORTHO05D004469 5.2e-30 136.7 606 25.2
Ah.02g126300 Amaranthus hybridus HOM05D000268 ORTHO05D004469 8.9e-30 136.0 601 26.0
unitig_899.g15136 Utricularia gibba HOM05D000268 ORTHO05D004469 8.9e-30 136.0 584 24.3
CAN.G836.12 Capsicum annuum HOM05D000268 ORTHO05D004469 1.2e-29 135.6 625 25.3
TPR.G29867 Trifolium pratense HOM05D000268 ORTHO05D004469 4.4e-29 133.7 631 24.9
Ca_24816_v3 Cicer arietinum L. HOM05D000268 ORTHO05D004469 1.7e-28 131.7 621 26.2
vmacro05281 Vaccinium macrocarpon HOM05D000268 ORTHO05D004469 1.7e-28 131.7 625 24.0
Lsat_1_v5_gn_4_176280 Lactuca sativa HOM05D000268 ORTHO05D004469 2.9e-28 131.0 567 25.2
Lalb_Chr05g0213051 Lupinus albus HOM05D000268 ORTHO05D004469 1.1e-27 129.0 605 24.0
Sc03g0001070 Simmondsia chinensis HOM05D000268 ORTHO05D004469 1.1e-27 129.0 615 23.4
Medtr5g018850 Medicago truncatula HOM05D000268 ORTHO05D004469 7.0e-27 126.3 634 25.7
Psat2g163120 Pisum sativum HOM05D000268 ORTHO05D004469 1.2e-26 125.6 637 25.0
DCAR_010955 Daucus carota HOM05D000268 ORTHO05D004469 6.0e-26 123.2 617 24.1
ECA232G0911 Erigeron canadensis HOM05D000268 ORTHO05D004469 1.7e-25 121.7 566 23.7
Glyma.02G060500 Glycine max HOM05D000268 ORTHO05D004469 1.7e-25 121.7 590 24.7
SHI08704 Sapria himalayana HOM05D000268 ORTHO05D004469 2.3e-25 121.3 575 26.3
Glyma.16G143100 Glycine max HOM05D000268 ORTHO05D004469 6.6e-25 119.8 606 25.4
Lalb_Chr05g0227191 Lupinus albus HOM05D000268 ORTHO05D004469 1.1e-24 119.0 603 23.5
HanXRQChr09g0265141 Helianthus annuus HOM05D000268 ORTHO05D004469 8.1e-23 112.8 587 23.3
Sed0027730 Sechium edule HOM05D000268 ORTHO05D004469 2.3e-22 111.3 298 30.5
TAR625G1531 Trochodendron aralioides HOM05D000268 ORTHO05D004469 2.3e-22 111.3 623 23.1
arahy.Tifrunner.gnm1.ann1.GI7SC3 Arachis hypogaea HOM05D000268 ORTHO05D004469 7.5e-21 106.3 573 22.5
TAR381G1430 Trochodendron aralioides HOM05D000268 ORTHO05D004469 9.8e-21 105.9 622 21.9
Nn1g05132 Nelumbo nucifera HOM05D000268 ORTHO05D004469 1.3e-20 105.5 615 22.8
Psat4g090200 Pisum sativum HOM05D000268 ORTHO05D004469 3.2e-19 100.9 394 24.9
MBI16_g10970_MAGBIO Magnolia biondii HOM05D000268 ORTHO05D004469 2.3e-17 94.7 633 22.4
Ca_22239_v3 Cicer arietinum L. HOM05D000268 ORTHO05D004469 5.1e-17 93.6 576 23.3
PSO170G1741 Papaver somniferum HOM05D000268 ORTHO05D004469 5.1e-17 93.6 588 24.3
HPP92_007809 Vanilla planifolia HOM05D000268 ORTHO05D004469 1.9e-16 91.7 424 22.6
PSO700G0125 Papaver somniferum HOM05D000268 ORTHO05D004469 4.3e-16 90.5 586 22.9
BcaC03g14596 Brassica carinata HOM05D032440 ORTHO05D032102 4.0e-14 84.0 81 60.5
Zm00001eb188560 Zea mays HOM05D000268 ORTHO05D004469 4.0e-14 84.0 91 46.2
Zm00001eb252300 Zea mays HOM05D000268 ORTHO05D004469 4.0e-14 84.0 72 52.8
Os02g0708600 Oryza sativa ssp. japonica HOM05D000268 ORTHO05D004469 5.2e-14 83.6 72 52.8
arahy.Tifrunner.gnm1.ann1.259MTB Arachis hypogaea HOM05D000268 ORTHO05D004469 1.5e-13 82.0 71 53.5
BolC8t51547H Brassica oleracea HOM05D023960 ORTHO05D024491 5.8e-13 80.1 38 100.0
SEGI_04650 Sequoiadendron giganteum HOM05D000268 ORTHO05D004469 5.8e-13 80.1 84 46.4
Zm00001eb159370 Zea mays HOM05D000268 ORTHO05D027468 5.8e-13 80.1 82 47.6
CDE09G0277 Ceratophyllum demersum HOM05D000268 ORTHO05D004469 1.3e-12 79.0 71 43.7
ATR0733G136 Amborella trichopoda HOM05D000268 ORTHO05D004469 1.7e-12 78.6 76 47.4
SEGI_11374 Sequoiadendron giganteum HOM05D000268 ORTHO05D004469 1.1e-11 75.9 80 42.5
Medtr8g078490 Medicago truncatula HOM05D000268 ORTHO05D004469 3.5e-10 70.9 85 42.4
Lj4g0005897 Lotus japonicus HOM05D000268 ORTHO05D004469 4.6e-10 70.5 98 37.8
Medtr4g132670 Medicago truncatula HOM05D000268 ORTHO05D004469 1.0e-09 69.3 214 25.7
TPR.G4454 Trifolium pratense HOM05D000268 ORTHO05D004469 2.3e-09 68.2 122 33.6
Psat6g097480 Pisum sativum HOM05D003780 ORTHO05D004469 9.6e-08 62.8 51 62.7
AagrBONN_evm.TU.Sc2ySwM_368.772 Anthoceros agrestis HOM05D000268 ORTHO05D004469 2.8e-07 61.2 45 66.7
Psat0ss24986g0120 Pisum sativum HOM05D000268 ORTHO05D004469 3.6e-07 60.8 51 60.8
Gorai.003G018400 Gossypium raimondii HOM05D000268 ORTHO05D004469 4.7e-07 60.5 63 54.0
SHI08703 Sapria himalayana HOM05D000268 ORTHO05D004469 1.1e-06 59.3 56 55.4
Pp3c19_9880 Physcomitrium patens HOM05D000268 ORTHO05D004469 1.8e-06 58.5 114 29.8
Lj3g0021520 Lotus japonicus HOM05D000268 ORTHO05D004469 2.4e-06 58.2 43 65.1
Psat0ss24986g0080 Pisum sativum HOM05D000268 ORTHO05D004469 2.4e-06 58.2 50 58.0
SMO304G0132 Selaginella moellendorffii HOM05D000268 ORTHO05D004469 2.4e-06 58.2 44 63.6
Gohir.D11G249100 Gossypium hirsutum HOM05D000268 ORTHO05D004469 3.1e-06 57.8 41 65.9
Gorai.007G266700 Gossypium raimondii HOM05D000268 ORTHO05D004469 3.1e-06 57.8 41 65.9
Lj4g0026497 Lotus japonicus HOM05D000268 ORTHO05D004469 6.8e-06 56.6 44 61.4
CBR_g22240 Chara braunii HOM05D000268 ORTHO05D004469 8.9e-06 56.2 44 59.1
Mapoly0003s0206 Marchantia polymorpha HOM05D000268 ORTHO05D004469 8.9e-06 56.2 41 63.4


User provided reference genes

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