Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 2324.7 1167 100.0
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 2285.0 1222 95.3
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2250.7 1198 95.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2249.6 1198 95.3
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 2236.5 1208 94.4
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 2103.2 1198 88.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 2070.0 1198 87.5
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 2058.9 1198 87.3
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 2040.0 1200 86.0
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 2037.3 1198 85.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 2013.8 1200 84.9
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1956.4 1198 81.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1875.1 1197 84.4
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1809.7 1206 75.5
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1644.8 1202 73.7
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1604.7 1201 66.3
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1602.0 1182 67.3
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1592.0 1205 66.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1591.2 1202 65.6
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1585.1 1200 65.6
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1583.5 1186 66.2
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1580.1 1199 65.9
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1573.5 1199 65.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1571.2 1201 64.9
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1565.8 1191 65.3
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1563.9 1197 64.4
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1561.2 1171 65.9
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1240 63.5
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1199 65.1
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1557.7 1196 65.0
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1555.4 1196 65.0
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1553.1 1196 64.7
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1552.0 1205 64.6
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1549.6 1195 64.3
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1194 64.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1548.1 1181 65.2
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1543.1 1193 64.1
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1537.3 1205 64.4
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1528.5 1199 63.2
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1516.5 1193 63.0
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1515.7 1200 63.1
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1511.9 1195 63.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1510.4 1199 63.0
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1509.6 1193 63.0
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1508.4 1195 62.3
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1505.0 1195 62.8
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1501.9 1216 61.3
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1501.5 1198 62.4
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1500.3 1195 62.2
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1499.2 1196 61.6
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1496.5 1195 62.3
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1494.9 1210 62.2
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1494.6 1193 61.5
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1493.0 1211 61.5
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1492.6 1195 61.7
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1491.9 1206 62.5
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1491.1 1196 61.6
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1490.7 1195 61.6
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1486.5 1300 59.0
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1481.5 1193 61.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1481.5 1195 61.3
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1479.5 1186 62.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1474.9 1199 61.5
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1473.0 1181 62.0
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1471.1 1179 61.2
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1466.4 1186 61.6
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1458.7 1196 60.6
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1456.4 1202 60.6
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1449.5 1144 62.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1431.4 1208 58.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1426.0 1196 58.9
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1422.9 1206 58.0
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1422.9 1239 57.7
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1422.1 764 92.7
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1421.8 1188 59.5
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1421.4 1211 58.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1418.3 1199 58.5
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1416.4 1014 67.9
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1410.6 1198 58.2
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1409.4 1198 58.1
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1407.9 1146 60.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1406.0 1187 58.7
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1400.6 1209 58.9
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1396.7 1203 58.4
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1395.9 1194 58.0
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1388.2 1273 55.3
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1384.0 1196 58.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1381.3 1155 58.8
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1380.5 1257 55.6
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1375.9 1196 58.9
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1360.1 1177 58.5
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1332.0 1191 56.8
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1326.2 1239 55.0
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1323.5 1013 64.3
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1293.1 1193 54.3
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1279.6 1271 53.4
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1250.0 1192 53.2
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1235.7 1192 53.4
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1221.8 987 61.9
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1171.0 970 61.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1159.4 1194 51.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1109.0 1211 47.9
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1093.6 1210 46.9
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1093.2 832 64.8
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1083.2 1195 50.0
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 8.0e-312 1073.9 1172 47.7
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 1.6e-307 1059.7 1219 47.3
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 5.0e-304 1048.1 590 88.1
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 5.2e-269 931.8 866 56.9
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 8.6e-248 861.3 712 62.5
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.2e-236 824.3 1123 41.0
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 6.6e-224 781.9 1097 40.4
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.1e-217 760.4 718 54.6
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.3e-208 730.3 1152 39.4
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 5.8e-204 715.7 580 70.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.8e-197 694.1 484 68.2
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.5e-196 691.0 555 63.6
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.9e-194 684.1 481 70.7
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.4e-165 587.4 754 44.8
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 3.4e-151 540.4 368 77.4
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.3e-130 470.7 368 63.9
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 3.7e-118 430.6 685 39.1
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.6e-111 407.9 411 52.8
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.0e-99 369.4 257 69.6
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.1e-77 296.2 280 56.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 2.6e-55 221.9 299 41.1
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 4.4e-50 204.5 288 41.0
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 4.5e-47 194.5 234 46.2
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 4.7e-44 184.5 162 67.3
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 8.5e-38 163.7 149 55.7
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 9.1e-32 143.7 190 44.2
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 4.0e-27 128.3 155 45.8
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.0e-22 113.6 140 48.6
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 4.0e-19 101.7 72 62.5
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 3.9e-14 85.1 203 31.0
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 6.6e-14 84.3 313 24.3
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.2e-12 80.1 94 47.9
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.5e-10 73.2 94 43.6
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 9.8e-10 70.5 67 53.7
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 4.9e-09 68.2 59 61.0
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.2e-07 63.5 107 38.3
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.3e-06 59.3 44 61.4
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 5.0e-06 58.2 45 57.8


User provided reference genes

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