Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 1.1e-139 501.1 589 100.0
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 4.0e-137 492.7 590 98.1
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.8e-129 467.2 589 96.4
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 2.9e-127 459.9 634 90.7
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 1.8e-116 424.1 589 90.3
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.5e-115 421.0 590 89.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.2e-114 417.2 589 84.6
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 2.1e-109 400.6 589 83.9
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 1.8e-108 397.5 293 90.1
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.1e-107 394.8 589 83.0
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 3.7e-106 389.8 589 81.5
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 7.7e-96 355.5 293 83.6
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 9.1e-89 332.0 293 79.2
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.6e-85 321.2 292 76.7
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.6e-85 321.2 293 78.2
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 2.1e-85 320.9 292 82.5
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 3.6e-85 320.1 293 77.1
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.3e-84 317.4 291 82.8
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 4.0e-84 316.6 293 76.5
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 6.8e-84 315.8 293 82.9
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 8.9e-84 315.5 293 75.4
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 5.7e-83 312.8 293 76.5
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.2e-82 310.8 293 76.1
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.2e-82 310.8 293 76.1
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 2.2e-82 310.8 293 75.4
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 2.2e-82 310.8 293 75.1
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 4.9e-82 309.7 293 81.2
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 6.3e-82 309.3 293 75.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 8.3e-82 308.9 293 75.8
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.1e-81 308.5 293 75.1
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 1.4e-81 308.1 294 68.4
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.8e-81 307.8 292 74.3
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.4e-81 307.4 293 75.4
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 2.4e-81 307.4 293 74.1
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 5.4e-81 306.2 293 74.1
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 9.2e-81 305.4 293 73.0
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 2.0e-80 304.3 293 74.7
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.7e-80 303.9 293 74.7
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.5e-80 303.1 293 74.7
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 5.9e-80 302.8 293 73.4
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 7.8e-80 302.4 293 74.1
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 1.0e-79 302.0 293 74.1
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 1.0e-79 302.0 293 79.5
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.3e-79 301.6 292 73.6
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.3e-79 301.6 292 73.6
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 2.9e-79 300.4 293 74.1
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 6.6e-79 299.3 293 73.7
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 6.6e-79 299.3 291 73.2
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 8.6e-79 298.9 293 73.7
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.1e-78 298.5 293 80.2
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.5e-78 298.1 293 79.9
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 3.3e-78 297.0 293 71.7
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 5.6e-78 296.2 292 71.2
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 1.2e-77 295.0 292 72.6
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-77 295.0 293 79.5
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.6e-77 294.7 293 79.5
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 2.1e-77 294.3 292 72.6
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 2.1e-77 294.3 292 72.6
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 2.1e-77 294.3 292 72.6
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 2.1e-77 294.3 293 72.4
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 3.6e-77 293.5 293 71.0
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 4.7e-77 293.1 292 70.2
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 6.1e-77 292.7 293 71.3
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 6.1e-77 292.7 294 72.1
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 1.4e-76 291.6 292 69.5
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 1.8e-76 291.2 292 72.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.3e-76 290.8 292 70.2
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 3.1e-76 290.4 292 69.2
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 5.2e-76 289.7 292 71.2
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 5.2e-76 289.7 292 72.3
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 8.9e-76 288.9 292 70.5
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 4.4e-75 286.6 292 70.2
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 5.8e-75 286.2 293 70.0
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 7.5e-75 285.8 292 70.5
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 2.9e-74 283.9 292 69.9
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 6.4e-74 282.7 292 69.9
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.4e-73 281.6 293 70.3
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 3.2e-73 280.4 292 68.8
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 7.0e-73 279.3 292 69.5
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 7.0e-73 279.3 292 68.5
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 7.0e-73 279.3 292 68.5
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.2e-72 278.5 292 63.4
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.5e-72 276.9 289 70.2
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 3.5e-72 276.9 293 77.8
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 7.8e-72 275.8 293 77.8
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 1.0e-71 275.4 292 67.5
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.7e-71 274.6 292 77.1
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 1.1e-70 271.9 293 51.9
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.9e-70 271.2 293 67.9
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.1e-69 267.7 321 49.2
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.8e-69 267.3 293 50.2
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 4.0e-68 263.5 293 67.6
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 4.4e-67 260.0 308 65.6
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 3.7e-66 256.9 294 65.0
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 4.9e-66 256.5 284 76.1
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 2.4e-65 254.2 293 59.0
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 2.5e-62 244.2 292 62.7
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 4.9e-50 203.4 196 86.2
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 6.4e-50 203.0 136 74.3
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 4.6e-48 196.8 137 73.0
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 1.0e-47 195.7 211 75.4
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.3e-47 195.3 136 70.6
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 1.2e-43 182.2 138 67.4
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 3.3e-38 164.1 80 96.2
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 5.3e-36 156.8 78 93.6
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 9.3e-33 146.0 589 29.5
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 1.6e-29 135.2 263 47.5
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 8.1e-29 132.9 103 67.0
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.2e-24 119.0 263 43.3
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.1e-24 118.2 82 70.7
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 2.7e-24 117.9 128 76.6
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 7.9e-24 116.3 103 58.3
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 3.9e-23 114.0 262 47.7
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.0e-19 101.7 399 29.8
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 7.7e-11 73.2 383 27.2
BcaC08g44952 Brassica carinata HOM05D006642 ORTHO05D032904 1.7e-10 72.0 145 42.1


User provided reference genes

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