Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39478 Brassica carinata HOM05D003452 ORTHO05D004046 1.2e-32 142.5 70 100.0
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 3.6e-32 141.0 70 98.6
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 1.0e-31 139.4 70 95.7
BraA09t39792Z Brassica rapa HOM05D003452 ORTHO05D004046 1.0e-31 139.4 70 95.7
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 3.0e-31 137.9 70 94.3
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 3.0e-31 137.9 70 94.3
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 2.2e-29 131.7 70 90.0
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 1.9e-25 118.6 64 85.9
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.7e-24 114.8 70 80.0
Carub.0005s1644 Capsella rubella HOM05D003452 ORTHO05D004046 4.1e-20 100.9 66 74.2
AT3G50100 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.2e-16 89.4 66 65.2
AL5G30220 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 2.7e-16 88.2 66 69.7
BcaC09g50006 Brassica carinata HOM05D003452 ORTHO05D004046 8.0e-16 86.7 64 68.8
C01p30090 Brassica napus HOM05D003452 ORTHO05D004046 8.0e-16 86.7 64 68.8
BolC1t02953H Brassica oleracea HOM05D003452 ORTHO05D004046 8.0e-16 86.7 64 68.8
A01p24270 Brassica napus HOM05D003452 ORTHO05D004046 3.9e-15 84.3 64 65.6
BraA01t02340Z Brassica rapa HOM05D003452 ORTHO05D004046 3.9e-15 84.3 64 65.6
BcaB05g23189 Brassica carinata HOM05D003452 ORTHO05D004046 6.7e-15 83.6 66 60.6
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 1.1e-14 82.8 67 58.2
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 2.0e-14 82.0 68 58.8
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.6e-14 81.6 65 64.6
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 7.4e-14 80.1 68 57.4
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 1.3e-13 79.3 68 58.8
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 1.8e-12 75.5 67 56.7
BcaC09g50010 Brassica carinata HOM05D003452 ORTHO05D004046 1.8e-12 75.5 64 59.4
C01p30070 Brassica napus HOM05D003452 ORTHO05D004046 1.8e-12 75.5 64 59.4
BolC1t02949H Brassica oleracea HOM05D003452 ORTHO05D004046 1.8e-12 75.5 64 59.4
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 3.1e-12 74.7 66 56.1
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 3.1e-12 74.7 68 55.9
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 7.0e-12 73.6 58 60.3
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 9.1e-12 73.2 68 55.9
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.2e-11 72.8 67 52.2
Duzib147G1492 Durio zibethinus HOM05D003452 ORTHO05D004046 2.0e-11 72.0 66 54.5
Gohir.A11G230304 Gossypium hirsutum HOM05D003452 ORTHO05D004046 2.0e-11 72.0 69 49.3
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 2.6e-11 71.6 68 55.9
Glyma.17G167900 Glycine max HOM05D003452 ORTHO05D004046 2.6e-11 71.6 67 49.3
Thecc.01G062600 Theobroma cacao HOM05D003452 ORTHO05D004046 2.6e-11 71.6 69 47.8
AL5G30210 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 3.5e-11 71.2 63 61.9
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 3.5e-11 71.2 71 56.3
Lalb_Chr16g0378691 Lupinus albus HOM05D003452 ORTHO05D004046 4.5e-11 70.9 68 52.9
RcHm_v2.0_Chr2g0106501 Rosa chinensis HOM05D003452 ORTHO05D004046 5.9e-11 70.5 69 49.3
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 7.7e-11 70.1 70 57.1
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 1.0e-10 69.7 66 56.1
Dinv26859 Davidia involucrata HOM05D003452 ORTHO05D004046 1.0e-10 69.7 65 53.8
Gohir.D11G232800 Gossypium hirsutum HOM05D003452 ORTHO05D004046 1.0e-10 69.7 69 47.8
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 1.0e-10 69.7 57 59.6
Gorai.003G066000 Gossypium raimondii HOM05D003452 ORTHO05D004046 1.3e-10 69.3 69 46.4
Haze_15356 Corylus avellana HOM05D003452 ORTHO05D004046 2.2e-10 68.6 64 53.1
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 2.9e-10 68.2 62 51.6
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 2.9e-10 68.2 71 52.1
CiPaw.02G006400 Carya illinoinensis HOM05D003452 ORTHO05D004046 3.8e-10 67.8 69 49.3
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 5.0e-10 67.4 67 49.3
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 5.0e-10 67.4 66 53.0
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 5.0e-10 67.4 66 53.0
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 5.0e-10 67.4 66 53.0
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 5.0e-10 67.4 64 51.6
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 6.5e-10 67.0 58 50.0
Rhsim10G0113000 Rhododendron simsii HOM05D003452 ORTHO05D004046 6.5e-10 67.0 62 48.4
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 8.5e-10 66.6 67 52.2
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 8.5e-10 66.6 59 49.2
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 1.1e-09 66.2 59 49.2
Lsat_1_v5_gn_3_90381 Lactuca sativa HOM05D003452 ORTHO05D004046 1.5e-09 65.9 59 49.2
Lalb_Chr05g0226301 Lupinus albus HOM05D003452 ORTHO05D004046 2.5e-09 65.1 67 43.3
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 2.5e-09 65.1 56 50.0
Phvul.003G240600 Phaseolus vulgaris HOM05D003452 ORTHO05D004046 3.2e-09 64.7 56 48.2
QL12p009800 Quercus lobata HOM05D003452 ORTHO05D004046 4.2e-09 64.3 55 54.5
Actinidia12025 Actinidia chinensis HOM05D003452 ORTHO05D004046 5.5e-09 63.9 62 46.8
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 5.5e-09 63.9 62 46.8
Lj5g0005600 Lotus japonicus HOM05D003452 ORTHO05D004046 5.5e-09 63.9 67 46.3
FAN26G2566 Fragaria x ananassa HOM05D003452 ORTHO05D004046 7.2e-09 63.5 68 44.1
Lj1g0003061 Lotus japonicus HOM05D003452 ORTHO05D004046 7.2e-09 63.5 67 46.3
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 9.4e-09 63.2 67 49.3
Cpa.g.sc55.98 Carica papaya HOM05D003452 ORTHO05D004046 1.2e-08 62.8 67 50.7
ClCG01G017040 Citrullus lanatus HOM05D003452 ORTHO05D004046 1.2e-08 62.8 65 52.3
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 1.6e-08 62.4 71 53.5
Manes.12G151100 Manihot esculenta HOM05D003452 ORTHO05D004046 1.6e-08 62.4 68 45.6
TAR381G1138 Trochodendron aralioides HOM05D003452 ORTHO05D004046 1.6e-08 62.4 67 43.3
FvH4_4g28290 Fragaria vesca HOM05D003452 ORTHO05D004046 2.1e-08 62.0 68 42.6
Hma1.2p1_0017F.1_g011830 Hydrangea macrophylla HOM05D003452 ORTHO05D004046 2.1e-08 62.0 68 42.6
Atru.chr3.259 Acer truncatum HOM05D003452 ORTHO05D004046 2.7e-08 61.6 59 50.8
AT3G50090 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 2.7e-08 61.6 61 55.7
AT5G05540 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 2.7e-08 61.6 68 50.0
FAN19G1474 Fragaria x ananassa HOM05D003452 ORTHO05D004046 2.7e-08 61.6 68 42.6
Lalb_Chr09g0323371 Lupinus albus HOM05D003452 ORTHO05D004046 2.7e-08 61.6 67 46.3
Sc18g0004770 Simmondsia chinensis HOM05D003452 ORTHO05D004046 2.7e-08 61.6 70 47.1
ATR0006G091 Amborella trichopoda HOM05D003452 ORTHO05D004046 3.6e-08 61.2 63 46.0
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.6e-08 61.2 60 56.7
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 3.6e-08 61.2 56 44.6
CSS0049847 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 4.7e-08 60.8 67 46.3
FAN23G2911 Fragaria x ananassa HOM05D003452 ORTHO05D004046 4.7e-08 60.8 68 42.6
Lj4A155G89 Lonicera japonica HOM05D003452 ORTHO05D004046 4.7e-08 60.8 56 48.2
Manes.12G151175 Manihot esculenta HOM05D003452 ORTHO05D004046 4.7e-08 60.8 68 44.1
SGA_v2.0_scaffold15G07361 Striga asiatica HOM05D003452 ORTHO05D004046 4.7e-08 60.8 55 49.1
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 6.1e-08 60.5 58 46.6
CsaV3_6G043510 Cucumis sativus L. HOM05D003452 ORTHO05D004046 6.1e-08 60.5 65 52.3
Thhalv10010950m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 6.1e-08 60.5 64 50.0
FvH4_1g16590 Fragaria vesca HOM05D003452 ORTHO05D004046 6.1e-08 60.5 68 42.6
MD02G1178000 Malus domestica HOM05D003452 ORTHO05D004046 6.1e-08 60.5 53 50.9
MD15G1287900 Malus domestica HOM05D003452 ORTHO05D004046 6.1e-08 60.5 60 48.3
FAN12G4129 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.8e-07 58.9 68 41.2
FAN28G2117 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.8e-07 58.9 68 41.2
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 2.3e-07 58.5 53 50.9
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 3.0e-07 58.2 56 48.2
CAN.G1778.3 Capsicum annuum HOM05D003452 ORTHO05D004046 5.2e-07 57.4 56 46.4
Medtr1g023955 Medicago truncatula HOM05D003452 ORTHO05D004046 5.2e-07 57.4 63 44.4
Oeu049888.1 Olea europaea HOM05D003452 ORTHO05D004046 5.2e-07 57.4 68 41.2
PSO384G3646 Papaver somniferum HOM05D003452 ORTHO05D004046 5.2e-07 57.4 65 40.0
PGR004G0567 Punica granatum HOM05D003452 ORTHO05D004046 5.2e-07 57.4 66 43.9
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 5.2e-07 57.4 64 50.0
Eucgr.I00803 Eucalyptus grandis HOM05D003452 ORTHO05D004046 1.2e-06 56.2 68 38.2
MSTRG.2860 Avicennia marina HOM05D003452 ORTHO05D004046 1.5e-06 55.8 66 43.9
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 1.5e-06 55.8 76 40.8
Nn1g04732 Nelumbo nucifera HOM05D003452 ORTHO05D004046 2.6e-06 55.1 60 40.0
PSO339G0322 Papaver somniferum HOM05D003452 ORTHO05D004046 2.6e-06 55.1 65 38.5
Psat6g004200 Pisum sativum HOM05D003452 ORTHO05D004046 3.3e-06 54.7 69 40.6
TPR.G34364 Trifolium pratense HOM05D003452 ORTHO05D004046 4.4e-06 54.3 63 41.3
unitig_744.g24372 Utricularia gibba HOM05D003452 ORTHO05D004046 5.7e-06 53.9 68 41.2
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 7.5e-06 53.5 53 50.9
Ca_13403_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 9.7e-06 53.1 64 37.5
Ca_13416_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 9.7e-06 53.1 64 37.5


User provided reference genes

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