Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38913 Brassica carinata HOM05D021353 ORTHO05D027413 4.0e-54 214.5 111 100.0
C08p18670 Brassica napus HOM05D021353 ORTHO05D027413 9.0e-46 186.8 97 100.0
BolC8t49493H Brassica oleracea HOM05D021353 ORTHO05D027413 3.4e-45 184.9 97 99.0
A05p09750 Brassica napus HOM05D021353 ORTHO05D027413 1.6e-42 176.0 97 93.8
BcaC07g38914 Brassica carinata HOM05D021353 ORTHO05D000764 1.3e-33 146.4 72 100.0
C02p40380 Brassica napus HOM05D021353 ORTHO05D096421 2.5e-24 115.5 67 89.6
BcaB07g31091 Brassica carinata HOM05D000917 ORTHO05D000764 1.0e-17 93.6 92 59.8
BcaB07g31089 Brassica carinata HOM05D000917 ORTHO05D000764 3.0e-17 92.0 59 79.7
AT1G54490 Arabidopsis thaliana HOM05D000917 ORTHO05D000764 6.7e-17 90.9 59 78.0
Thhalv10023239m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 1.1e-16 90.1 59 79.7
AL1G64900 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 1.5e-16 89.7 59 76.3
BcaC04g22010 Brassica carinata HOM05D000917 ORTHO05D000764 3.3e-16 88.6 59 78.0
C09p24840 Brassica napus HOM05D000917 ORTHO05D000764 3.3e-16 88.6 59 78.0
A09p19520 Brassica napus HOM05D000917 ORTHO05D000764 4.3e-16 88.2 59 76.3
BraA09t37567Z Brassica rapa HOM05D000917 ORTHO05D000764 4.3e-16 88.2 59 76.3
SpUn0001_0730 Schrenkiella parvula HOM05D000917 ORTHO05D000764 7.4e-16 87.4 59 78.0
BolC9t55379H Brassica oleracea HOM05D000917 ORTHO05D000764 9.7e-16 87.0 59 76.3
Carub.0002s0935 Capsella rubella HOM05D000917 ORTHO05D000764 9.7e-16 87.0 59 76.3
BcaNung05777 Brassica carinata HOM05D000917 ORTHO05D000764 1.1e-14 83.6 59 74.6
Aa31LG2G12310 Aethionema arabicum HOM05D000917 ORTHO05D000764 3.1e-14 82.0 59 72.9
CARHR055590 Cardamine hirsuta HOM05D000917 ORTHO05D000764 3.1e-14 82.0 59 72.9
THA.LOC104805813 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 2.2e-12 75.9 59 64.4
Actinidia05759 Actinidia chinensis HOM05D000917 ORTHO05D000764 1.6e-10 69.7 57 63.2
Sc20g0000190 Simmondsia chinensis HOM05D000917 ORTHO05D000764 2.1e-10 69.3 59 59.3
TWI36G0557 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 1.0e-09 67.0 58 58.6
QL03p022655 Quercus lobata HOM05D000917 ORTHO05D000764 2.3e-09 65.9 58 58.6
CSS0011511 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 8.8e-09 63.9 59 57.6
CSS0041372 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 8.8e-09 63.9 59 57.6
Potri.005G048900 Populus trichocarpa HOM05D000917 ORTHO05D000764 8.8e-09 63.9 58 60.3
AUR62000967 Chenopodium quinoa HOM05D000917 ORTHO05D000764 1.5e-08 63.2 62 58.1
CiPaw.07G007300 Carya illinoinensis HOM05D000917 ORTHO05D000764 1.9e-08 62.8 58 62.1
CiPaw.08G178600 Carya illinoinensis HOM05D000917 ORTHO05D000764 1.9e-08 62.8 58 60.3
Ah.06g192670 Amaranthus hybridus HOM05D000917 ORTHO05D000764 2.5e-08 62.4 63 52.4
Dinv11574 Davidia involucrata HOM05D000917 ORTHO05D000764 2.5e-08 62.4 59 57.6
Hund22107 Selenicereus undatus HOM05D000917 ORTHO05D000764 4.3e-08 61.6 63 55.6
vmacro05067 Vaccinium macrocarpon HOM05D000917 ORTHO05D000764 5.7e-08 61.2 56 57.1
Potri.013G035600 Populus trichocarpa HOM05D000917 ORTHO05D000764 7.4e-08 60.8 58 53.4
Rhsim07G0176100 Rhododendron simsii HOM05D000917 ORTHO05D000764 9.7e-08 60.5 55 56.4
Eucgr.H04389 Eucalyptus grandis HOM05D000917 ORTHO05D000764 1.3e-07 60.1 59 55.9
Prupe.6G338500 Prunus persica HOM05D000917 ORTHO05D000764 1.3e-07 60.1 59 54.2
CSS0046893 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 1.7e-07 59.7 57 56.1
Sabra05G0044200 Salix brachista HOM05D000917 ORTHO05D000764 2.2e-07 59.3 58 58.6
EL10Ac4g09193 Beta vulgaris HOM05D000917 ORTHO05D000764 2.8e-07 58.9 63 50.8
ATR0697G262 Amborella trichopoda HOM05D000917 ORTHO05D000764 3.7e-07 58.5 58 51.7
MD04G1219200 Malus domestica HOM05D000917 ORTHO05D000764 3.7e-07 58.5 58 51.7
MD12G1236200 Malus domestica HOM05D000917 ORTHO05D000764 3.7e-07 58.5 58 53.4
PGR004G0849 Punica granatum HOM05D000917 ORTHO05D000764 6.3e-07 57.8 60 51.7
Duzib177G0650 Durio zibethinus HOM05D000917 ORTHO05D000764 8.2e-07 57.4 58 55.2
Thecc.05G289800 Theobroma cacao HOM05D000917 ORTHO05D000764 8.2e-07 57.4 58 53.4
Migut.N01939 Erythranthe guttata HOM05D000917 ORTHO05D000764 1.1e-06 57.0 59 52.5
AUR62004998 Chenopodium quinoa HOM05D000917 ORTHO05D000764 1.4e-06 56.6 62 54.8
Gohir.D13G108500 Gossypium hirsutum HOM05D000917 ORTHO05D000764 1.4e-06 56.6 58 55.2
Lj9A667G46 Lonicera japonica HOM05D000917 ORTHO05D000764 1.4e-06 56.6 70 47.1
Gorai.013G121900 Gossypium raimondii HOM05D000917 ORTHO05D000764 1.8e-06 56.2 58 55.2
RcHm_v2.0_Chr3g0452231 Rosa chinensis HOM05D000917 ORTHO05D000764 1.8e-06 56.2 61 49.2
FvH4_6g03690 Fragaria vesca HOM05D000917 ORTHO05D000764 2.4e-06 55.8 61 49.2
FAN02G1568 Fragaria x ananassa HOM05D000917 ORTHO05D000764 2.4e-06 55.8 61 49.2
FAN05G0110 Fragaria x ananassa HOM05D000917 ORTHO05D000764 2.4e-06 55.8 61 49.2
FAN09G4119 Fragaria x ananassa HOM05D000917 ORTHO05D000764 2.4e-06 55.8 61 49.2
FAN14G2821 Fragaria x ananassa HOM05D000917 ORTHO05D000764 2.4e-06 55.8 61 49.2
Gohir.A13G105700 Gossypium hirsutum HOM05D000917 ORTHO05D000764 2.4e-06 55.8 58 55.2
ClCG02G016360 Citrullus lanatus HOM05D000917 ORTHO05D000764 3.1e-06 55.5 58 56.9
FAN05G5013 Fragaria x ananassa HOM05D000917 ORTHO05D000764 3.1e-06 55.5 61 49.2
Ca_10062_v3 Cicer arietinum L. HOM05D000917 ORTHO05D000764 4.1e-06 55.1 58 53.4
HanXRQChr14g0445531 Helianthus annuus HOM05D000917 ORTHO05D000764 4.1e-06 55.1 58 48.3
Solyc04g049010.3 Solanum lycopersicum HOM05D000917 ORTHO05D000764 4.1e-06 55.1 57 47.4
Sopen04g018450 Solanum pennellii HOM05D000917 ORTHO05D000764 4.1e-06 55.1 57 47.4
Hund06989 Selenicereus undatus HOM05D000917 ORTHO05D000764 5.3e-06 54.7 67 47.8
Lalb_Chr21g0310871 Lupinus albus HOM05D000917 ORTHO05D000764 6.9e-06 54.3 59 52.5
Manes.08G127400 Manihot esculenta HOM05D000917 ORTHO05D000764 6.9e-06 54.3 58 53.4
Cc02_g31410 Coffea canephora HOM05D000917 ORTHO05D000764 9.1e-06 53.9 59 49.2
TPR.G11137 Trifolium pratense HOM05D000917 ORTHO05D000764 9.1e-06 53.9 58 55.2


User provided reference genes

Program Settings