Gene: Solyc04g049010.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g049010.3
  • Transcript Identifier Solyc04g049010.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 38410711-38451296 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g049010.3.1
  • uniprot E5LBH0
  • gene_id Solyc04g049010

Descriptions

  • Description ethylene insensitive 5/7
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031087
IEA
GOA Databasedeadenylation-independent decapping of nuclear-transcribed mRNA
GO:0051301
IEA
GOA Databasecell division
GO:0009826
IEA
GOA Databaseunidimensional cell growth
GO:0010087
IEA
GOA Databasephloem or xylem histogenesis
GO:0006402
IEA
GOA DatabasemRNA catabolic process
GO:0010286
IEA
GOA Databaseheat acclimation
GO:0010587
IEA
GOA DatabasemiRNA catabolic process
GO:0040029
IEA
GOA Databaseregulation of gene expression, epigenetic
GO:0000291
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0061014
ISO
PLAZA Integrative Orthologypositive regulation of mRNA catabolic process AT1G54490
GO:0009873
ISO
PLAZA Integrative Orthologyethylene-activated signaling pathway AT1G54490
GO:0009961
ISO
PLAZA Integrative Orthologyresponse to 1-aminocyclopropane-1-carboxylic acid AT1G54490
GO:0009630
ISO
PLAZA Integrative Orthologygravitropism AT1G54490
GO:0009723
ISO
PLAZA Integrative Orthologyresponse to ethylene AT1G54490
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000956
IBA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0070370
IEA
GOA Databasecellular heat acclimation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G54490
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0004534
IBA
IEA
GOA Database5'-3' exoribonuclease activity
GO:0004534
IEA
InterPro5'-3' exoribonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
IEA
GOA Databasepolysome
GO:0000932
IEA
GOA DatabaseP-body
GO:0005829
IEA
GOA Databasecytosol
GO:0010494
IEA
GOA Databasecytoplasmic stress granule
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004859 Putative 5-3 exonuclease
IPR027073 5'-3' exoribonuclease
IPR017151 5'-3' exoribonuclease type 2
IPR041412 Xrn1, helical domain
Mapman id Description
16.4.2.3 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.exoribonuclease (XRN4)