Gene: CSS0046893

General Information

Structural Information

  • Species Camellia sinensis var. sinensis
  • Gene Identifier CSS0046893
  • Transcript Identifier CSS0046893.1
  • Gene Type Coding gene
  • Location Chr6 : 65075702-65104660 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid CSS0046893.1

Descriptions

  • Description Exoribonuclease 4 isoform 1 [Theobroma cacao]
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009961
ISO
PLAZA Integrative Orthologyresponse to 1-aminocyclopropane-1-carboxylic acid AT1G54490
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT1G54490
GO:0000291
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, exonucleolytic AT1G54490
GO:0070370
ISO
PLAZA Integrative Orthologycellular heat acclimation AT1G54490
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT1G54490
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT1G54490
GO:0040029
ISO
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT1G54490
GO:0009723
ISO
PLAZA Integrative Orthologyresponse to ethylene AT1G54490
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT1G54490
GO:0009630
ISO
PLAZA Integrative Orthologygravitropism AT1G54490
GO:0009873
ISO
PLAZA Integrative Orthologyethylene-activated signaling pathway AT1G54490
GO:0031087
ISO
PLAZA Integrative Orthologydeadenylation-independent decapping of nuclear-transcribed mRNA AT1G54490
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT1G54490
GO:0061014
ISO
PLAZA Integrative Orthologypositive regulation of mRNA catabolic process AT1G54490
GO:0010286
ISO
PLAZA Integrative Orthologyheat acclimation AT1G54490
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G54490
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G54490
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004534
IEA
InterPro5'-3' exoribonuclease activity
GO:0004527
IEA
InterProexonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G54490
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT1G54490
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT1G54490
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT1G54490
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004859 Putative 5-3 exonuclease
IPR017151 5'-3' exoribonuclease type 2
IPR027073 5'-3' exoribonuclease
IPR041412 Xrn1, helical domain
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
16.4.2.3 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.exoribonuclease (XRN4)