Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38574 Brassica carinata HOM05D002303 ORTHO05D023498 7.3e-74 280.4 137 100.0
C08p13800 Brassica napus HOM05D002303 ORTHO05D023498 6.2e-73 277.3 137 98.5
BolC8t49015H Brassica oleracea HOM05D002303 ORTHO05D023498 1.2e-68 263.1 137 93.4
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 4.1e-32 141.7 73 87.7
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 4.1e-32 141.7 73 87.7
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 4.1e-32 141.7 73 87.7
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 4.1e-32 141.7 73 87.7
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 4.1e-32 141.7 73 87.7
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 4.1e-32 141.7 73 87.7
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 9.1e-32 140.6 73 86.3
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 1.5e-31 139.8 73 86.3
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 2.0e-31 139.4 73 84.9
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 2.0e-31 139.4 73 84.9
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 2.6e-31 139.0 73 84.9
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 2.6e-31 139.0 73 84.9
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 3.5e-31 138.7 73 84.9
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 4.5e-31 138.3 73 84.9
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 4.5e-31 138.3 73 84.9
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 4.5e-31 138.3 73 84.9
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 4.5e-31 138.3 73 84.9
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 82.2
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 7.7e-31 137.5 73 84.9
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
TAR622G0752 Trochodendron aralioides HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 1.0e-30 137.1 73 83.6
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 1.3e-30 136.7 84 76.2
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 1.3e-30 136.7 117 60.7
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 1.3e-30 136.7 73 82.2
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 1.3e-30 136.7 73 83.6
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
CARHR005840 Cardamine hirsuta HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 84.9
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 83.6
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 1.7e-30 136.3 73 82.2
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 83.6
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.2e-30 136.0 72 84.7
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 83.6
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Sabra10G0042400 Salix brachista HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 83.6
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 2.2e-30 136.0 73 82.2
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 2.9e-30 135.6 73 82.2
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 2.9e-30 135.6 73 82.2
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 2.9e-30 135.6 73 82.2
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 2.9e-30 135.6 73 82.2
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 3.8e-30 135.2 73 80.8
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 3.8e-30 135.2 73 82.2
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 3.8e-30 135.2 73 82.2
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 3.8e-30 135.2 73 82.2
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 82.2
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 82.2
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 82.2
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 82.2
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 80.8
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 82.2
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 82.2
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 5.0e-30 134.8 73 80.8
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 6.5e-30 134.4 73 82.2
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 6.5e-30 134.4 73 80.8
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 6.5e-30 134.4 73 80.8
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 6.5e-30 134.4 73 80.8
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 6.5e-30 134.4 73 80.8
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 8.5e-30 134.0 73 80.8
Lsat_1_v5_gn_9_45861 Lactuca sativa HOM05D002303 ORTHO05D006504 8.5e-30 134.0 73 80.8
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 8.5e-30 134.0 73 82.2
Oeu044822.1 Olea europaea HOM05D002303 ORTHO05D006504 1.1e-29 133.7 73 80.8
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 1.1e-29 133.7 73 80.8
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 1.1e-29 133.7 73 80.8
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 1.1e-29 133.7 73 79.5
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 1.4e-29 133.3 73 80.8
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 1.9e-29 132.9 73 79.5
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 1.9e-29 132.9 73 80.8
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 1.9e-29 132.9 73 82.2
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 2.5e-29 132.5 73 80.8
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 4.2e-29 131.7 73 78.1
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 5.5e-29 131.3 73 80.8
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 5.5e-29 131.3 73 80.8
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 4.7e-28 128.3 73 76.7
PSO302G0183 Papaver somniferum HOM05D002303 ORTHO05D006504 4.7e-28 128.3 73 78.1
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 3.9e-27 125.2 69 79.7
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 1.5e-26 123.2 73 75.3
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 4.8e-25 118.2 63 84.1
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 6.3e-25 117.9 88 64.8
SEGI_38390 Sequoiadendron giganteum HOM05D002303 ORTHO05D023498 2.0e-23 112.8 83 63.9
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.5e-23 111.7 74 70.3
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.3e-22 110.2 66 75.8
AagrBONN_evm.TU.Sc2ySwM_368.2120 Anthoceros agrestis HOM05D002303 ORTHO05D023498 2.2e-22 109.4 71 73.2
MCO15G060 Micromonas commoda HOM05D002303 ORTHO05D006504 2.5e-21 105.9 73 61.6
RcHm_v2.0_Chr5g0051741 Rosa chinensis HOM05D002303 ORTHO05D006504 4.2e-21 105.1 77 63.6
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 8.8e-19 97.4 50 86.0
Cre04.g226450 Chlamydomonas reinhardtii HOM05D002303 ORTHO05D006504 3.7e-17 92.0 74 56.8
PRCOL_00001031 Prasinoderma coloniale HOM05D002303 ORTHO05D006504 7.0e-16 87.8 73 50.7
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 7.7e-15 84.3 65 61.5
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 1.7e-14 83.2 73 47.9
BcaC07g38610 Brassica carinata HOM05D002303 ORTHO05D000950 2.2e-14 82.8 42 83.3
Cfa027163 Carpinus fangiana HOM05D002303 ORTHO05D006504 2.2e-09 66.2 83 42.2


User provided reference genes

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