Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 2.8e-288 994.6 506 100.0
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 2.1e-283 978.4 507 98.6
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 7.9e-283 976.5 507 98.6
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.0e-282 976.1 507 98.0
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.0e-282 976.1 507 98.0
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 3.1e-279 964.5 508 97.0
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 6.1e-275 950.3 506 95.1
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 5.2e-266 920.6 506 91.9
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 1.1e-255 886.3 511 88.5
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 7.0e-255 883.6 511 88.1
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 2.0e-254 882.1 512 88.3
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 2.9e-253 878.2 511 87.5
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 6.0e-238 827.4 512 82.2
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 3.9e-229 798.1 511 80.0
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.6e-227 792.7 514 78.8
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 3.6e-227 791.6 493 79.7
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.8e-226 789.3 493 79.3
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.2e-225 786.6 492 80.5
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 7.6e-225 783.9 513 77.4
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 2.9e-224 781.9 512 77.9
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 3.2e-223 778.5 512 77.7
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 1.2e-217 760.0 496 77.2
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 4.6e-214 748.0 485 76.7
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 1.0e-213 746.9 502 76.7
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 1.7e-213 746.1 416 88.9
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.8e-189 666.4 510 65.3
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.1e-188 663.7 511 65.0
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 1.8e-186 656.4 515 65.6
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 4.5e-185 651.7 514 65.2
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 4.5e-185 651.7 513 64.9
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 2.5e-183 646.0 477 67.1
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 1.6e-182 643.3 514 62.6
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 2.1e-182 642.9 517 64.6
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 2.7e-182 642.5 513 65.7
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 3.5e-182 642.1 514 64.6
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 6.1e-182 641.3 517 64.4
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 7.9e-182 641.0 520 63.3
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 5.1e-181 638.3 509 64.2
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 6.7e-181 637.9 513 64.9
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 6.7e-181 637.9 480 65.4
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 1.1e-180 637.1 510 65.1
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 1.5e-180 636.7 512 64.5
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 1.9e-180 636.3 514 64.2
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 2.5e-180 636.0 481 66.5
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 3.3e-180 635.6 488 65.4
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 5.7e-180 634.8 514 63.2
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 9.7e-180 634.0 519 64.2
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 1.3e-179 633.6 520 62.1
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 2.2e-179 632.9 518 63.3
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 2.8e-179 632.5 510 63.9
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 2.8e-179 632.5 517 64.0
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 8.2e-179 630.9 498 64.9
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 1.4e-178 630.2 478 66.9
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 2.4e-178 629.4 515 62.1
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 2.4e-178 629.4 512 64.6
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 3.4e-177 625.5 500 63.8
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.3e-176 623.6 518 63.9
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 2.2e-176 622.9 524 63.0
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 6.5e-176 621.3 514 63.2
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 8.5e-176 620.9 515 62.7
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 3.2e-175 619.0 522 62.8
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 3.2e-175 619.0 522 62.8
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 3.2e-175 619.0 519 62.6
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 5.5e-175 618.2 513 63.4
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 2.1e-174 616.3 484 64.3
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 2.7e-174 615.9 515 62.9
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.4e-173 613.6 521 62.4
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 1.4e-173 613.6 516 62.4
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.4e-173 613.6 512 62.1
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 5.1e-173 611.7 517 62.5
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 8.8e-173 610.9 514 61.7
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 2.0e-172 609.8 517 62.9
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 1.7e-171 606.7 516 61.6
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 2.8e-171 605.9 513 62.4
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 8.2e-171 604.4 512 62.3
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 1.1e-170 604.0 517 62.3
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 2.4e-170 602.8 514 61.3
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 3.1e-170 602.4 515 61.7
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 5.9e-169 598.2 522 61.1
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 6.5e-168 594.7 506 60.5
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 4.2e-167 592.0 509 60.1
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 7.2e-167 591.3 507 61.3
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 7.2e-167 591.3 515 60.0
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 9.4e-167 590.9 516 60.1
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 2.7e-166 589.3 511 60.7
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.7e-166 589.3 524 58.8
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 2.6e-164 582.8 512 59.6
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 7.4e-164 581.3 477 62.3
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 9.7e-164 580.9 516 59.1
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.2e-163 579.7 507 59.2
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 3.7e-163 578.9 511 60.7
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 6.3e-163 578.2 495 61.0
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.8e-162 576.6 518 58.9
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 2.4e-162 576.2 573 55.3
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 5.9e-161 571.6 515 59.4
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 3.8e-160 568.9 477 60.2
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 1.6e-158 563.5 517 57.8
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.0e-157 558.9 511 57.9
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 8.8e-157 557.8 490 59.0
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 8.8e-157 557.8 490 59.0
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.6e-156 556.2 520 59.4
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 2.6e-156 556.2 508 58.1
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 9.7e-156 554.3 489 60.7
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 2.2e-155 553.1 515 58.6
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 8.2e-155 551.2 524 56.1
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 1.4e-154 550.4 449 61.9
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.4e-149 533.9 593 50.9
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 2.0e-148 530.0 511 54.8
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 9.8e-148 527.7 475 58.3
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.3e-147 527.3 513 55.9
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.3e-144 517.3 508 54.9
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 6.5e-144 515.0 510 56.9
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 5.2e-141 505.4 511 52.6
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 7.0e-138 495.0 639 47.1
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.5e-137 492.3 432 57.4
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 4.5e-137 492.3 504 50.6
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 1.7e-136 490.3 504 51.8
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.7e-136 490.3 488 55.5
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 2.5e-135 486.5 486 53.1
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 2.9e-131 473.0 517 51.1
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 2.5e-127 459.9 473 52.0
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 5.6e-127 458.8 482 51.9
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 5.6e-127 458.8 496 49.8
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.6e-124 449.9 496 49.2
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 4.4e-124 449.1 520 50.8
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 3.7e-123 446.0 538 49.1
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 7.0e-122 441.8 517 48.4
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 4.6e-121 439.1 438 52.5
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.0e-120 438.0 558 46.6
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 3.0e-120 436.4 496 47.6
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 6.6e-120 435.3 428 52.3
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 3.4e-116 422.9 494 47.0
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 7.1e-114 415.2 517 47.6
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 5.1e-112 409.1 546 45.8
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.3e-111 406.4 520 48.1
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 3.6e-110 402.9 382 52.6
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 8.9e-109 398.3 272 70.2
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 5.1e-104 382.5 498 43.2
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.3e-103 379.8 515 44.7
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.2e-102 377.9 384 55.7
AUR62003293 Chenopodium quinoa HOM05D003128 ORTHO05D004333 6.8e-101 372.1 313 60.4
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 3.4e-100 369.8 272 66.5
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.6e-97 360.9 337 57.0
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 2.4e-93 347.1 453 45.0
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 2.0e-92 344.0 339 54.0
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.6e-92 343.6 219 76.7
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 2.4e-90 337.0 451 46.3
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 7.1e-90 335.5 427 42.9
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.7e-88 330.9 394 48.0
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 9.6e-87 325.1 398 47.2
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 3.7e-78 296.6 191 75.9
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 3.7e-70 270.0 385 40.3
ClCG03G013760 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.1e-58 231.9 490 32.4
C08p48830 Brassica napus HOM05D003128 ORTHO05D024111 3.0e-56 223.8 315 49.5
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 1.5e-52 211.5 137 75.2
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.9e-50 204.5 122 76.2
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 3.7e-46 190.3 108 81.5
Rhsim07G0045000 Rhododendron simsii HOM05D003128 ORTHO05D004333 7.0e-45 186.0 202 49.0
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 2.5e-42 177.6 374 39.8
arahy.Tifrunner.gnm1.ann1.31C5CF Arachis hypogaea HOM05D003128 ORTHO05D004333 3.1e-37 160.6 165 53.3
Haze_27303 Corylus avellana HOM05D003128 ORTHO05D004333 4.1e-37 160.2 144 55.6
Glyma.14G080000 Glycine max HOM05D003128 ORTHO05D004333 4.4e-31 140.2 167 52.7
BolC8t52420H Brassica oleracea HOM05D003128 ORTHO05D024111 1.2e-28 132.1 116 64.7
SEGI_30432 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 2.0e-28 131.3 190 43.7
CSS0048862 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D028355 3.5e-28 130.6 75 77.3
AL5G41890 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.2e-26 123.6 107 62.6
BolC8t50947H Brassica oleracea HOM05D003128 ORTHO05D004333 6.6e-19 99.8 120 55.8
SEGI_13299 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 5.6e-18 96.7 53 83.0
Cpa.g.c41200 Carica papaya HOM05D003128 ORTHO05D004333 3.6e-17 94.0 111 53.2
arahy.Tifrunner.gnm1.ann1.X912KG Arachis hypogaea HOM05D003128 ORTHO05D004333 6.1e-17 93.2 51 86.3
HanXRQChr15g0470541 Helianthus annuus HOM05D003128 ORTHO05D028355 8.3e-14 82.8 74 55.4
A09p65030 Brassica napus HOM05D058929 ORTHO05D024111 4.1e-13 80.5 233 33.9
BolC8t52396H Brassica oleracea HOM05D003128 ORTHO05D028355 2.7e-12 77.8 41 87.8
BraA09t41846Z Brassica rapa HOM05D058929 ORTHO05D024111 1.7e-11 75.1 101 51.5
Sc07g0004040 Simmondsia chinensis HOM05D003128 ORTHO05D004333 6.6e-11 73.2 45 77.8
C08p48560 Brassica napus HOM05D003128 ORTHO05D004333 8.6e-11 72.8 43 74.4
CDE08G1262 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 1.1e-10 72.4 77 48.1
AL3G43770 Arabidopsis lyrata HOM05D003128 ORTHO05D080098 4.7e-09 67.0 62 69.4
Sc07g0004050 Simmondsia chinensis HOM05D003128 ORTHO05D028355 5.2e-08 63.5 49 57.1
QL02p014302 Quercus lobata HOM05D000075 ORTHO05D000264 2.0e-07 61.6 43 67.4
ECA238G4552 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-07 61.2 229 27.9
RhsimUnG0209100 Rhododendron simsii HOM05D003128 ORTHO05D037442 5.8e-07 60.1 63 46.0
Oeu011362.1 Olea europaea HOM05D000060 ORTHO05D003150 7.5e-07 59.7 48 56.2
Oeu062566.2 Olea europaea HOM05D001688 ORTHO05D001571 7.5e-07 59.7 237 26.2


User provided reference genes

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