Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38547 Brassica carinata HOM05D002303 ORTHO05D039961 5.2e-86 320.9 145 100.0
BolC8t48983H Brassica oleracea HOM05D002303 ORTHO05D039961 3.7e-76 288.1 131 98.5
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 1.3e-44 183.3 269 41.3
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 1.3e-44 183.3 269 41.6
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 1.3e-44 183.3 269 41.6
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 2.9e-44 182.2 269 41.6
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 2.9e-44 182.2 269 40.9
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 2.9e-44 182.2 269 40.9
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 2.9e-44 182.2 269 40.9
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 2.9e-44 182.2 269 40.9
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 2.9e-44 182.2 269 40.9
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 3.8e-44 181.8 269 41.3
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 3.8e-44 181.8 269 41.3
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 1.3e-41 173.3 227 44.9
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 1.1e-40 170.2 269 39.4
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 3.3e-40 168.7 269 40.1
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 3.3e-40 168.7 269 40.1
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 1.6e-39 166.4 269 39.4
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 1.6e-39 166.4 269 39.4
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.0
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 2.1e-39 166.0 269 39.4
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 2.8e-39 165.6 269 39.4
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 2.8e-39 165.6 269 39.4
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 3.6e-39 165.2 269 38.7
Oeu044822.1 Olea europaea HOM05D002303 ORTHO05D006504 3.6e-39 165.2 269 38.7
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 3.6e-39 165.2 269 38.7
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 3.6e-39 165.2 269 38.7
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 3.6e-39 165.2 269 38.3
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 4.8e-39 164.9 269 39.0
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 6.2e-39 164.5 269 39.0
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 6.2e-39 164.5 269 38.7
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 6.2e-39 164.5 269 38.7
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 6.2e-39 164.5 282 37.9
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.1e-38 163.7 269 39.0
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 1.1e-38 163.7 269 38.3
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.1e-38 163.7 269 37.9
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.1e-38 163.7 269 37.9
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 1.4e-38 163.3 236 41.9
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 1.8e-38 162.9 269 37.9
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 1.8e-38 162.9 269 37.9
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 1.8e-38 162.9 269 37.9
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 3.1e-38 162.2 268 37.7
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 3.1e-38 162.2 268 37.7
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 3.1e-38 162.2 269 39.0
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 6.9e-38 161.0 269 38.7
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 6.9e-38 161.0 269 38.3
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 6.9e-38 161.0 269 38.3
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 1.2e-37 160.2 269 37.5
RcHm_v2.0_Chr5g0051741 Rosa chinensis HOM05D002303 ORTHO05D006504 2.6e-37 159.1 252 38.5
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 9.9e-37 157.1 269 37.5
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 2.2e-36 156.0 269 36.1
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 2.9e-36 155.6 269 36.8
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 4.9e-36 154.8 269 35.7
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 4.9e-36 154.8 269 35.7
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 8.4e-36 154.1 269 38.3
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 1.1e-35 153.7 269 35.3
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 3.2e-35 152.1 240 37.9
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 5.4e-35 151.4 269 37.5
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 4.6e-34 148.3 269 36.8
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 6.0e-34 147.9 269 36.8
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 6.0e-34 147.9 269 36.8
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 6.0e-34 147.9 255 37.6
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 3.0e-33 145.6 269 36.4
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 5.1e-33 144.8 269 37.2
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 6.7e-33 144.4 268 35.8
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 6.7e-33 144.4 269 35.7
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 2.5e-32 142.5 269 35.7
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 2.5e-32 142.5 256 37.1
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 7.4e-32 141.0 268 35.1
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 1.3e-31 140.2 269 36.1
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 1.6e-31 139.8 269 35.3
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 2.1e-31 139.4 269 35.3
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 2.1e-31 139.4 269 35.7
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 6.2e-31 137.9 269 34.9
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 8.1e-31 137.5 269 34.6
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 1.1e-30 137.1 269 34.6
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 1.4e-30 136.7 269 34.9
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 1.4e-30 136.7 269 34.9
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 1.4e-30 136.7 269 35.3
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 1.4e-30 136.7 269 35.7
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 1.8e-30 136.3 269 34.6
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.4e-30 136.0 269 35.3
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 2.4e-30 136.0 269 34.2
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 2.4e-30 136.0 269 35.3
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 3.1e-30 135.6 269 34.6
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 4.0e-30 135.2 269 35.3
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 4.0e-30 135.2 269 34.2
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 5.3e-30 134.8 269 34.2
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 5.3e-30 134.8 269 35.3
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 6.9e-30 134.4 269 34.9
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 9.0e-30 134.0 268 35.1
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 9.0e-30 134.0 269 34.9
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 2.0e-29 132.9 269 34.2
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 2.0e-29 132.9 269 34.2
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 2.6e-29 132.5 268 34.7
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 3.4e-29 132.1 269 34.2
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 4.5e-29 131.7 269 34.2
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 4.5e-29 131.7 269 33.8
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 4.5e-29 131.7 269 33.8
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 4.5e-29 131.7 269 34.6
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 1.3e-28 130.2 281 33.5
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.7e-28 129.8 252 35.7
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 1.7e-28 129.8 269 33.5
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 2.2e-28 129.4 269 33.8
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 8.4e-28 127.5 269 33.8
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 8.4e-28 127.5 269 33.8
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 1.1e-27 127.1 269 33.5
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 1.4e-27 126.7 269 32.7
PSO302G0183 Papaver somniferum HOM05D002303 ORTHO05D006504 1.9e-27 126.3 265 33.2
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 3.2e-27 125.6 269 33.1
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 9.3e-27 124.0 269 33.1
Lsat_1_v5_gn_9_45861 Lactuca sativa HOM05D002303 ORTHO05D006504 1.6e-26 123.2 124 52.4
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 2.1e-26 122.9 269 33.5
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 7.9e-26 120.9 269 32.3
Cre04.g226450 Chlamydomonas reinhardtii HOM05D002303 ORTHO05D006504 2.3e-25 119.4 270 29.6
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 3.0e-25 119.0 275 31.6
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 3.0e-25 119.0 269 32.7
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 3.9e-25 118.6 281 31.7
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 6.7e-25 117.9 269 32.3
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 6.7e-25 117.9 269 32.3
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 6.7e-25 117.9 269 32.3
MCO15G060 Micromonas commoda HOM05D002303 ORTHO05D006504 1.1e-24 117.1 266 29.3
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 1.1e-24 117.1 269 31.2
CARHR005840 Cardamine hirsuta HOM05D002303 ORTHO05D006504 4.3e-24 115.2 252 33.3
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 7.4e-24 114.4 120 51.7
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.1e-23 112.8 120 50.8
PGSC0003DMG402030529 Solanum tuberosum HOM05D002303 ORTHO05D006504 2.0e-21 106.3 122 50.0
Sabra10G0042400 Salix brachista HOM05D002303 ORTHO05D006504 2.6e-21 105.9 124 47.6
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.5e-21 105.1 261 29.9
TAR622G0752 Trochodendron aralioides HOM05D002303 ORTHO05D006504 1.0e-20 104.0 124 46.8
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 1.7e-20 103.2 124 47.6
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 1.1e-16 90.5 124 39.5
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 1.9e-16 89.7 124 42.7
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 1.1e-14 84.0 182 29.1
PRCOL_00001031 Prasinoderma coloniale HOM05D002303 ORTHO05D006504 2.4e-14 82.8 263 24.3
Cfa027163 Carpinus fangiana HOM05D002303 ORTHO05D006504 3.8e-12 75.5 124 33.1


User provided reference genes

Program Settings