Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37664 Brassica carinata HOM05D003620 ORTHO05D004261 4.1e-34 147.5 75 100.0
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.6e-17 92.4 64 73.4
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 1.6e-17 92.4 64 73.4
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 2.6e-17 91.7 64 73.4
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 4.5e-17 90.9 64 71.9
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 4.5e-17 90.9 64 71.9
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 4.5e-17 90.9 64 71.9
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 4.5e-17 90.9 64 70.3
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 1.0e-16 89.7 64 70.3
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.0e-16 89.7 64 70.3
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.3e-16 89.4 64 68.8
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 2.9e-16 88.2 64 67.2
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 5.0e-16 87.4 66 65.2
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 8.5e-16 86.7 64 65.6
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 8.5e-16 86.7 64 65.6
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 8.5e-16 86.7 64 65.6
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 8.5e-16 86.7 64 65.6
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 8.5e-16 86.7 64 65.6
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.1e-15 86.3 64 65.6
Sp7g23980 Schrenkiella parvula HOM05D003620 ORTHO05D004261 1.1e-15 86.3 65 66.2
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 1.9e-15 85.5 64 65.6
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 1.9e-15 85.5 64 65.6
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 2.5e-15 85.1 64 64.1
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 3.2e-15 84.7 64 64.1
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 3.2e-15 84.7 64 67.2
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 5.5e-15 84.0 64 62.5
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 7.2e-15 83.6 64 62.5
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 2.1e-14 82.0 64 64.1
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 2.1e-14 82.0 64 62.5
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 2.7e-14 81.6 64 60.9
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 2.7e-14 81.6 64 62.5
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 3.6e-14 81.3 64 62.5
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 3.6e-14 81.3 64 60.9
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 4.7e-14 80.9 64 62.5
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 4.7e-14 80.9 64 62.5
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 6.1e-14 80.5 64 62.5
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 6.1e-14 80.5 64 60.9
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.0e-13 79.7 64 60.9
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.0e-13 79.7 64 60.9
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 1.4e-13 79.3 64 57.8
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.8e-13 79.0 63 61.9
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 1.8e-13 79.0 64 60.9
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 1.8e-13 79.0 64 59.4
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 1.8e-13 79.0 64 60.9
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 2.3e-13 78.6 64 60.9
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.0e-13 78.2 64 60.9
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 3.0e-13 78.2 64 60.9
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 4.0e-13 77.8 64 57.8
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 4.0e-13 77.8 63 63.5
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 4.0e-13 77.8 63 63.5
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 5.2e-13 77.4 64 59.4
Cc02_g21930 Coffea canephora HOM05D003620 ORTHO05D004261 5.2e-13 77.4 64 60.9
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 5.2e-13 77.4 64 56.2
SGA_v2.0_scaffold83G26271 Striga asiatica HOM05D003620 ORTHO05D004261 6.8e-13 77.0 64 59.4
GSVIVG01029733001 Vitis vinifera HOM05D003620 ORTHO05D004261 6.8e-13 77.0 64 60.9
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 8.8e-13 76.6 63 60.3
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 8.8e-13 76.6 64 59.4
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 1.2e-12 76.3 64 60.9
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.2e-12 76.3 64 57.8
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.5e-12 75.9 64 59.4
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 1.5e-12 75.9 64 56.2
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 1.5e-12 75.9 64 57.8
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 2.0e-12 75.5 63 57.1
Lj5C243G7 Lonicera japonica HOM05D003620 ORTHO05D004261 2.0e-12 75.5 64 54.7
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.0e-12 75.5 64 57.8
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 2.6e-12 75.1 64 57.8
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 2.6e-12 75.1 64 57.8
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 2.6e-12 75.1 69 58.0
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 2.6e-12 75.1 64 57.8
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 3.4e-12 74.7 63 58.7
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 3.4e-12 74.7 63 58.7
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 3.4e-12 74.7 64 56.2
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 4.4e-12 74.3 63 57.1
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 4.4e-12 74.3 64 57.8
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 4.4e-12 74.3 64 57.8
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 5.7e-12 73.9 64 54.7
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 5.7e-12 73.9 64 57.8
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 7.5e-12 73.6 64 56.2
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 7.5e-12 73.6 63 58.7
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 7.5e-12 73.6 63 58.7
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 7.5e-12 73.6 64 59.4
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.3e-11 72.8 64 56.2
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 1.3e-11 72.8 64 56.2
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 1.3e-11 72.8 64 56.2
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 1.7e-11 72.4 64 56.2
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 1.7e-11 72.4 64 56.2
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 2.2e-11 72.0 64 56.2
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 2.2e-11 72.0 64 56.2
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 2.2e-11 72.0 64 57.8
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 2.8e-11 71.6 64 56.2
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 3.7e-11 71.2 64 53.1
Haze_10769 Corylus avellana HOM05D003620 ORTHO05D004261 4.8e-11 70.9 60 56.7
Oeu047370.1 Olea europaea HOM05D003620 ORTHO05D004261 4.8e-11 70.9 63 54.0
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 6.3e-11 70.5 64 53.1
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 8.3e-11 70.1 64 59.4
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 8.3e-11 70.1 64 54.7
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 1.4e-10 69.3 60 56.7
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 9.1e-10 66.6 64 50.0
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 2.0e-09 65.5 64 53.1
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 2.7e-09 65.1 64 50.0
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 6.5e-08 60.5 87 41.4
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 7.2e-07 57.0 64 48.4
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 1.2e-06 56.2 64 48.4
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 1.6e-06 55.8 64 45.3
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 1.6e-06 55.8 64 45.3


User provided reference genes

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