Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 9.9e-68 260.0 132 100.0
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 4.0e-53 211.5 121 87.6
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 6.9e-53 210.7 121 87.6
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 9.0e-53 210.3 121 87.6
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 9.0e-53 210.3 121 87.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 9.0e-53 210.3 121 87.6
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 9.0e-53 210.3 121 87.6
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 9.0e-53 210.3 121 87.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 9.0e-53 210.3 121 87.6
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 3.4e-52 208.4 126 84.1
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 5.8e-52 207.6 121 86.8
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 2.2e-51 205.7 119 84.9
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 9.3e-50 200.3 119 84.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 7.4e-47 190.7 117 80.3
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 2.2e-43 179.1 126 72.2
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 5.9e-36 154.5 126 60.3
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 7.6e-36 154.1 121 62.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.2e-35 152.5 121 62.0
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 6.5e-35 151.0 118 64.4
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-34 149.8 115 65.2
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 1.4e-34 149.8 118 62.7
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 5.5e-34 147.9 118 60.2
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 5.5e-34 147.9 122 59.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 7.2e-34 147.5 115 63.5
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 9.3e-34 147.1 109 67.0
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 9.3e-34 147.1 117 61.5
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.2e-33 146.7 118 62.7
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 1.2e-33 146.7 118 62.7
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.6e-33 146.4 115 64.3
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 3.6e-33 145.2 118 61.9
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 4.6e-33 144.8 109 64.2
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.6e-33 144.8 109 64.2
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 1.0e-32 143.7 119 57.1
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 3.9e-32 141.7 116 59.5
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 5.1e-32 141.4 116 59.5
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 6.7e-32 141.0 118 58.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 1.1e-31 140.2 109 65.1
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 1.5e-31 139.8 115 59.1
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 1.9e-31 139.4 117 58.1
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 2.5e-31 139.0 115 60.0
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 3.3e-31 138.7 119 56.3
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 3.3e-31 138.7 119 55.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 4.3e-31 138.3 116 56.0
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 4.3e-31 138.3 116 56.0
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 4.3e-31 138.3 116 58.6
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 7.4e-31 137.5 116 59.5
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 9.7e-31 137.1 108 61.1
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 9.7e-31 137.1 117 59.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 9.7e-31 137.1 114 60.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 1.3e-30 136.7 116 57.8
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.3e-30 136.7 107 58.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 1.3e-30 136.7 117 54.7
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 1.7e-30 136.3 112 59.8
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 1.7e-30 136.3 117 57.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 2.2e-30 136.0 113 57.5
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.2e-30 136.0 113 56.6
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 2.2e-30 136.0 118 55.9
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 6.3e-30 134.4 113 55.8
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 1.1e-29 133.7 117 57.3
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 1.4e-29 133.3 132 54.5
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.4e-29 133.3 118 55.1
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.4e-29 133.3 111 57.7
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 1.8e-29 132.9 116 56.9
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 1.8e-29 132.9 116 56.9
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 3.1e-29 132.1 116 56.0
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 3.1e-29 132.1 114 54.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 4.1e-29 131.7 117 54.7
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 4.1e-29 131.7 116 56.0
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 4.1e-29 131.7 113 56.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 4.1e-29 131.7 114 54.4
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 6.9e-29 131.0 120 54.2
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 9.1e-29 130.6 116 55.2
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 9.1e-29 130.6 119 54.6
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.5e-28 129.8 118 55.9
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 3.4e-28 128.6 116 52.6
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.5e-28 128.3 128 52.3
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 5.9e-28 127.9 115 57.4
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-27 127.1 110 57.3
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.0e-27 127.1 111 53.2
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.0e-27 127.1 122 51.6
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.3e-27 126.7 105 55.2
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.3e-27 126.7 111 53.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.7e-27 126.3 113 54.0
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.7e-27 126.3 122 50.0
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 2.2e-27 125.9 115 53.9
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 2.2e-27 125.9 108 55.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 2.9e-27 125.6 116 53.4
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 3.8e-27 125.2 122 50.8
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.0e-27 124.8 122 51.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 6.5e-27 124.4 116 51.7
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 6.5e-27 124.4 117 52.1
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.1e-26 123.6 116 53.4
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.5e-26 122.5 129 49.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 5.5e-26 121.3 116 53.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 5.5e-26 121.3 140 47.1
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.2e-25 120.2 129 49.6
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.8e-24 116.3 59 100.0
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.6e-23 112.5 116 50.0
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 4.4e-23 111.7 106 50.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 9.7e-23 110.5 102 52.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.8e-21 106.3 106 50.0
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.5e-20 103.2 105 45.7
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 3.2e-18 95.5 127 39.4
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 6.1e-17 91.3 120 35.8
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 3.0e-16 89.0 108 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 5.7e-15 84.7 109 38.5
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 3.7e-06 55.5 37 67.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 4.8e-06 55.1 44 56.8


User provided reference genes

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