Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36679 Brassica carinata HOM05D001719 ORTHO05D027772 4.1e-29 130.6 60 100.0
C09p24350 Brassica napus HOM05D001719 ORTHO05D027772 8.0e-25 116.3 57 87.7
C05p50050 Brassica napus HOM05D001719 ORTHO05D027772 1.4e-24 115.5 54 98.1
A08p09350 Brassica napus HOM05D001719 ORTHO05D027772 2.4e-21 104.8 51 90.2
AL4G37080 Arabidopsis lyrata HOM05D001719 ORTHO05D007646 8.1e-09 63.2 74 50.0
AT2G39670 Arabidopsis thaliana HOM05D001719 ORTHO05D007646 8.1e-09 63.2 74 50.0
BcaB02g09098 Brassica carinata HOM05D001719 ORTHO05D007646 8.1e-09 63.2 74 50.0
Carub.0004s2171 Capsella rubella HOM05D001719 ORTHO05D007646 8.1e-09 63.2 74 50.0
Thhalv10016689m.g Eutrema salsugineum HOM05D001719 ORTHO05D007646 8.1e-09 63.2 74 50.0
Sp4g21930 Schrenkiella parvula HOM05D001719 ORTHO05D007646 8.1e-09 63.2 74 50.0
BcaC02g12095 Brassica carinata HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
BcaC05g27325 Brassica carinata HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
A05p06770 Brassica napus HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
C04p07920 Brassica napus HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
BolC4t22409H Brassica oleracea HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
BraA05t19644Z Brassica rapa HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
CARHR134510 Cardamine hirsuta HOM05D001719 ORTHO05D007646 3.1e-08 61.2 74 48.6
arahy.Tifrunner.gnm1.ann1.30T4YV Arachis hypogaea HOM05D001719 ORTHO05D007646 4.0e-08 60.8 74 47.3
arahy.Tifrunner.gnm1.ann1.WUGE08 Arachis hypogaea HOM05D001719 ORTHO05D007646 4.0e-08 60.8 74 47.3
Lj8A83T63 Lonicera japonica HOM05D001719 ORTHO05D007646 4.0e-08 60.8 74 48.6
Aa31LG5G19980 Aethionema arabicum HOM05D001719 ORTHO05D007646 6.8e-08 60.1 74 48.6
Cpa.g.sc1.412 Carica papaya HOM05D001719 ORTHO05D007646 8.9e-08 59.7 74 47.3
Lsat_1_v5_gn_9_66060 Lactuca sativa HOM05D001719 ORTHO05D007646 1.5e-07 58.9 74 47.3
LjContig00141g0020777 Lotus japonicus HOM05D001719 ORTHO05D007646 2.0e-07 58.5 74 47.3
Psat2g041640 Pisum sativum HOM05D001719 ORTHO05D007646 2.0e-07 58.5 74 45.9
THA.LOC104810032 Tarenaya hassleriana HOM05D001719 ORTHO05D007646 2.0e-07 58.5 74 47.3
Actinidia02943 Actinidia chinensis HOM05D001719 ORTHO05D007646 2.6e-07 58.2 74 45.9
ECA232G4841 Erigeron canadensis HOM05D001719 ORTHO05D007646 2.6e-07 58.2 74 45.9
Atru.chr12.441 Acer truncatum HOM05D001719 ORTHO05D007646 3.4e-07 57.8 74 45.9
Atru.chr12.442 Acer truncatum HOM05D001719 ORTHO05D007646 3.4e-07 57.8 74 45.9
Ah.16g102360 Amaranthus hybridus HOM05D001719 ORTHO05D007646 3.4e-07 57.8 74 44.6
EL10Ac2g04741 Beta vulgaris HOM05D001719 ORTHO05D007646 3.4e-07 57.8 74 44.6
HanXRQChr02g0049161 Helianthus annuus HOM05D001719 ORTHO05D007646 3.4e-07 57.8 74 45.9
THA.LOC104824278 Tarenaya hassleriana HOM05D001719 ORTHO05D007646 3.4e-07 57.8 74 45.9
CiPaw.01G288000 Carya illinoinensis HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
ClCG07G003250 Citrullus lanatus HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Gohir.A05G301700 Gossypium hirsutum HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Gohir.D05G301400 Gossypium hirsutum HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Gorai.009G319500 Gossypium raimondii HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Manes.10G029700 Manihot esculenta HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Potri.008G056500 Populus trichocarpa HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Hund13767 Selenicereus undatus HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 44.6
Thecc.10G040800 Theobroma cacao HOM05D001719 ORTHO05D007646 4.4e-07 57.4 74 45.9
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 5.8e-07 57.0 74 45.9
Nitab4.5_0000065g0020 Nicotiana tabacum HOM05D001719 ORTHO05D007646 5.8e-07 57.0 74 45.9
Oeu064373.1 Olea europaea HOM05D001719 ORTHO05D007646 5.8e-07 57.0 72 45.8
Peaxi162Scf00658g00730 Petunia axillaris HOM05D001719 ORTHO05D007646 5.8e-07 57.0 74 45.9
Sabra08G0041100 Salix brachista HOM05D001719 ORTHO05D007646 5.8e-07 57.0 74 45.9
CAN.G130.9 Capsicum annuum HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 45.9
Ca_05895_v3 Cicer arietinum L. HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 44.6
CsaV3_5G008000 Cucumis sativus L. HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 44.6
Duzib114G0935 Durio zibethinus HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 44.6
Lalb_Chr04g0251261 Lupinus albus HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 44.6
Medtr5g079860 Medicago truncatula HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 44.6
Solyc06g030570.3 Solanum lycopersicum HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 45.9
Sopen06g009920 Solanum pennellii HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 45.9
TPR.G3478 Trifolium pratense HOM05D001719 ORTHO05D007646 7.6e-07 56.6 74 44.6
Ciclev10031999m.g Citrus clementina HOM05D001719 ORTHO05D007646 9.9e-07 56.2 38 73.7
COL.COLO4_15056 Corchorus olitorius HOM05D001719 ORTHO05D007646 9.9e-07 56.2 74 44.6
PGR044G0426 Punica granatum HOM05D001719 ORTHO05D007646 9.9e-07 56.2 74 44.6
QL08p059654 Quercus lobata HOM05D001719 ORTHO05D007646 9.9e-07 56.2 74 44.6
Sed0013284 Sechium edule HOM05D001719 ORTHO05D007646 9.9e-07 56.2 74 44.6
SGA_v2.0_scaffold426G51503 Striga asiatica HOM05D001719 ORTHO05D007646 9.9e-07 56.2 47 59.6
AUR62012094 Chenopodium quinoa HOM05D001719 ORTHO05D007646 1.3e-06 55.8 74 43.2
Glyma.02G247700 Glycine max HOM05D001719 ORTHO05D007646 1.3e-06 55.8 74 44.6
Glyma.14G068600 Glycine max HOM05D001719 ORTHO05D007646 1.3e-06 55.8 74 44.6
Nitab4.5_0001719g0010 Nicotiana tabacum HOM05D001719 ORTHO05D007646 1.3e-06 55.8 74 44.6
SEGI_27628 Sequoiadendron giganteum HOM05D001719 ORTHO05D007646 1.3e-06 55.8 74 45.9
GSVIVG01016561001 Vitis vinifera HOM05D001719 ORTHO05D007646 1.3e-06 55.8 74 44.6
AUR62039372 Chenopodium quinoa HOM05D001719 ORTHO05D007646 1.7e-06 55.5 74 43.2
Cc02_g07790 Coffea canephora HOM05D001719 ORTHO05D007646 1.7e-06 55.5 74 43.2
Haze_17073 Corylus avellana HOM05D001719 ORTHO05D007646 1.7e-06 55.5 74 44.6
DCAR_005051 Daucus carota HOM05D001719 ORTHO05D007646 1.7e-06 55.5 74 43.2
Dinv26021 Davidia involucrata HOM05D001719 ORTHO05D007646 1.7e-06 55.5 74 43.2
Eucgr.J00005 Eucalyptus grandis HOM05D001719 ORTHO05D007646 2.2e-06 55.1 74 44.6
TWI63G1737 Tripterygium wilfordii HOM05D001719 ORTHO05D007646 2.2e-06 55.1 74 43.2
CANSAT56G1570 Cannabis sativa HOM05D001719 ORTHO05D007646 2.9e-06 54.7 74 44.6
CANSAT56G2080 Cannabis sativa HOM05D001719 ORTHO05D007646 2.9e-06 54.7 74 44.6
MELO3C023846.2 Cucumis melo HOM05D001719 ORTHO05D007646 2.9e-06 54.7 74 43.2
Prupe.2G236300 Prunus persica HOM05D001719 ORTHO05D007646 2.9e-06 54.7 74 43.2
Sc14g0004680 Simmondsia chinensis HOM05D001719 ORTHO05D007646 2.9e-06 54.7 74 43.2
TAR633G0218 Trochodendron aralioides HOM05D001719 ORTHO05D007646 2.9e-06 54.7 74 43.2
RcHm_v2.0_Chr1g0367701 Rosa chinensis HOM05D001719 ORTHO05D007646 3.7e-06 54.3 74 43.2
SMO347G0403 Selaginella moellendorffii HOM05D001719 ORTHO05D007646 3.7e-06 54.3 72 41.7
Aqoxy2G02149 Aquilegia oxysepala HOM05D001719 ORTHO05D007646 4.9e-06 53.9 74 43.2
MSTRG.8997 Avicennia marina HOM05D001719 ORTHO05D007646 4.9e-06 53.9 74 41.9
VMungo0647G1743 Vigna mungo HOM05D001719 ORTHO05D007646 4.9e-06 53.9 38 68.4
PRCOL_00003727 Prasinoderma coloniale HOM05D001719 ORTHO05D007646 6.4e-06 53.5 39 61.5
CDE04G3735 Ceratophyllum demersum HOM05D001719 ORTHO05D007646 8.4e-06 53.1 74 41.9
CBR_g41638 Chara braunii HOM05D001719 ORTHO05D007646 8.4e-06 53.1 47 57.4
MD07G1012700 Malus domestica HOM05D001719 ORTHO05D007646 8.4e-06 53.1 74 41.9
Os01g0973400 Oryza sativa ssp. japonica HOM05D001719 ORTHO05D007646 8.4e-06 53.1 74 43.2


User provided reference genes

Program Settings