Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.6e-59 232.6 122 100.0
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 8.9e-47 190.3 102 100.0
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 9.2e-44 180.3 128 77.3
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 2.1e-43 179.1 126 79.4
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 1.7e-42 176.0 128 75.0
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 5.1e-42 174.5 128 75.0
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 5.1e-42 174.5 128 74.2
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 8.6e-42 173.7 128 75.8
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.1e-41 173.3 128 75.0
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 2.5e-41 172.2 124 75.8
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 4.3e-41 171.4 124 75.8
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 1.2e-40 169.9 124 75.0
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.2e-40 169.9 124 75.0
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.2e-40 169.9 124 75.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 1.8e-39 166.0 102 89.2
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 2.2e-37 159.1 128 66.4
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 4.6e-35 151.4 121 68.6
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 5.8e-30 134.4 120 60.8
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 6.4e-29 131.0 119 59.7
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.1e-28 130.2 119 58.8
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.4e-28 129.8 119 58.8
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.9e-28 129.4 119 58.8
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 5.4e-28 127.9 119 58.0
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 9.3e-28 127.1 126 56.3
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 1.6e-27 126.3 118 60.2
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 2.1e-27 125.9 120 59.2
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 2.7e-27 125.6 126 57.9
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 2.7e-27 125.6 126 57.9
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.7e-27 125.6 126 57.9
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.6e-27 124.8 119 57.1
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 6.0e-27 124.4 126 55.6
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 6.0e-27 124.4 119 56.3
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 6.0e-27 124.4 119 57.1
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 7.8e-27 124.0 114 61.4
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 7.8e-27 124.0 126 57.9
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 1.0e-26 123.6 119 56.3
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.0e-26 123.6 119 58.8
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 1.7e-26 122.9 126 57.1
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.0e-26 122.1 119 55.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.0e-26 122.1 119 55.5
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.0e-26 122.1 126 55.6
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.0e-26 122.1 126 55.6
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 3.0e-26 122.1 120 55.8
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 5.1e-26 121.3 117 57.3
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 5.1e-26 121.3 114 60.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 5.1e-26 121.3 117 57.3
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.1e-26 121.3 119 55.5
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 5.1e-26 121.3 119 56.3
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 6.6e-26 120.9 128 53.9
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 8.7e-26 120.6 119 54.6
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 8.7e-26 120.6 113 56.6
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.5e-25 119.8 116 55.2
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.5e-25 119.8 116 55.2
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 1.5e-25 119.8 119 56.3
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 1.5e-25 119.8 119 55.5
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.5e-25 119.8 119 56.3
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.9e-25 119.4 119 55.5
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.9e-25 119.4 119 54.6
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 1.9e-25 119.4 113 55.8
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 3.3e-25 118.6 119 57.1
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 3.3e-25 118.6 119 55.5
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 4.3e-25 118.2 127 51.2
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 5.6e-25 117.9 135 51.9
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 7.3e-25 117.5 119 54.6
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 7.3e-25 117.5 119 57.1
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 9.6e-25 117.1 121 52.9
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 9.6e-25 117.1 121 52.9
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 9.6e-25 117.1 119 54.6
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.6e-24 116.3 113 54.9
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 1.6e-24 116.3 119 53.8
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 1.6e-24 116.3 119 55.5
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 2.8e-24 115.5 119 52.9
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 2.8e-24 115.5 126 55.6
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 3.6e-24 115.2 112 57.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 4.8e-24 114.8 119 56.3
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 6.2e-24 114.4 111 55.9
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.1e-24 114.0 115 55.7
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.1e-23 113.6 116 52.6
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.1e-23 113.6 119 53.8
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.4e-23 113.2 119 54.6
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.8e-23 112.8 119 53.8
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 2.4e-23 112.5 119 53.8
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 3.1e-23 112.1 120 50.8
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.0e-23 111.7 119 52.1
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.0e-23 111.7 119 52.1
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.0e-23 111.7 119 53.8
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.0e-23 111.7 119 53.8
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 5.3e-23 111.3 119 51.3
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 5.3e-23 111.3 119 53.8
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 5.3e-23 111.3 119 53.8
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 6.9e-23 110.9 116 52.6
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 9.0e-23 110.5 112 54.5
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.2e-22 110.2 112 55.4
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.5e-22 109.8 119 52.9
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.0e-22 109.4 108 58.3
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 3.4e-22 108.6 116 50.9
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 5.8e-22 107.8 115 49.6
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 5.8e-22 107.8 113 52.2
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.3e-21 106.7 113 52.2
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.3e-21 106.7 112 51.8
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 6.4e-21 104.4 119 48.7
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 8.4e-21 104.0 119 49.6
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 8.4e-21 104.0 116 51.7
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 3.2e-20 102.1 117 47.0
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 9.3e-20 100.5 121 47.1
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.6e-19 99.8 113 49.6
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.7e-19 99.0 118 46.6
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 3.0e-18 95.5 112 45.5
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 6.6e-18 94.4 105 52.4
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 6.6e-18 94.4 80 55.0
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 5.6e-17 91.3 111 45.0
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 9.0e-15 84.0 99 47.5
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 4.5e-14 81.6 113 41.6
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.7e-13 79.7 70 60.0
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 6.7e-10 67.8 112 37.5
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 8.7e-10 67.4 110 38.2
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 2.8e-08 62.4 87 41.4
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.8e-08 61.6 121 36.4
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 4.8e-08 61.6 45 62.2
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 8.1e-08 60.8 122 32.8
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.4e-07 60.1 104 32.7


User provided reference genes

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