Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35901 Brassica carinata HOM05D003213 ORTHO05D003693 9.7e-77 290.0 144 100.0
Sp6g06320 Schrenkiella parvula HOM05D003213 ORTHO05D003693 1.9e-24 116.3 158 46.2
BolC7t41428H Brassica oleracea HOM05D003213 ORTHO05D003693 1.6e-23 113.2 54 100.0
BcaB05g23861 Brassica carinata HOM05D003213 ORTHO05D003693 6.2e-23 111.3 158 44.9
BcaC03g16372 Brassica carinata HOM05D003213 ORTHO05D003693 6.2e-23 111.3 158 44.9
A02p26370 Brassica napus HOM05D003213 ORTHO05D003693 6.2e-23 111.3 158 44.9
C02p41910 Brassica napus HOM05D003213 ORTHO05D003693 6.2e-23 111.3 158 44.9
BolC2t10224H Brassica oleracea HOM05D003213 ORTHO05D003693 6.2e-23 111.3 158 44.9
BraA02t07639Z Brassica rapa HOM05D003213 ORTHO05D003693 6.2e-23 111.3 158 44.9
Thhalv10026795m.g Eutrema salsugineum HOM05D003213 ORTHO05D003693 2.0e-21 106.3 107 51.4
CARHR255490 Cardamine hirsuta HOM05D003213 ORTHO05D003693 5.8e-21 104.8 158 41.8
Aa31LG9G11070 Aethionema arabicum HOM05D003213 ORTHO05D003693 2.2e-20 102.8 158 41.1
C01p13230 Brassica napus HOM05D003213 ORTHO05D003693 5.1e-17 91.7 154 37.7
CARHR227160 Cardamine hirsuta HOM05D003213 ORTHO05D003693 6.6e-17 91.3 156 36.5
Carub.0007s2084 Capsella rubella HOM05D003213 ORTHO05D003693 8.7e-17 90.9 156 38.5
BcaC09g51426 Brassica carinata HOM05D003213 ORTHO05D003693 1.1e-16 90.5 153 36.6
BolC1t01297H Brassica oleracea HOM05D003213 ORTHO05D003693 1.1e-16 90.5 153 36.6
AL7G33560 Arabidopsis lyrata HOM05D003213 ORTHO05D003693 1.5e-16 90.1 156 37.2
AT4G20330 Arabidopsis thaliana HOM05D003213 ORTHO05D003693 1.5e-16 90.1 156 37.8
BcaNung01799 Brassica carinata HOM05D003213 ORTHO05D003693 1.9e-16 89.7 153 35.9
BraA01t01065Z Brassica rapa HOM05D003213 ORTHO05D003693 2.5e-16 89.4 153 35.9
A01p11190 Brassica napus HOM05D003213 ORTHO05D003693 7.3e-16 87.8 153 35.3
Thhalv10025896m.g Eutrema salsugineum HOM05D003213 ORTHO05D003693 1.6e-15 86.7 153 34.6
Eucgr.L03418 Eucalyptus grandis HOM05D003213 ORTHO05D003693 3.6e-15 85.5 137 36.5
Nitab4.5_0003440g0010 Nicotiana tabacum HOM05D003213 ORTHO05D003693 4.0e-14 82.0 155 34.2
THA.LOC104814932 Tarenaya hassleriana HOM05D003213 ORTHO05D003693 4.0e-14 82.0 155 34.2
CsaV3_4G006050 Cucumis sativus L. HOM05D003213 ORTHO05D003693 5.3e-14 81.6 157 34.4
Sed0001180 Sechium edule HOM05D003213 ORTHO05D003693 9.0e-14 80.9 157 34.4
HPP92_025983 Vanilla planifolia HOM05D003213 ORTHO05D003693 9.0e-14 80.9 157 35.0
Cfa020619 Carpinus fangiana HOM05D003213 ORTHO05D003693 1.2e-13 80.5 155 34.2
Potri.001G107500 Populus trichocarpa HOM05D003213 ORTHO05D003693 1.5e-13 80.1 154 34.4
Prupe.5G094900 Prunus persica HOM05D003213 ORTHO05D003693 1.5e-13 80.1 156 35.9
PGSC0003DMG400005187 Solanum tuberosum HOM05D003213 ORTHO05D003693 1.5e-13 80.1 155 33.5
A02p13280 Brassica napus HOM05D017530 ORTHO05D003693 2.0e-13 79.7 45 82.2
Dinv37666 Davidia involucrata HOM05D003213 ORTHO05D003693 2.0e-13 79.7 154 34.4
Carub.0007s2043 Capsella rubella HOM05D003213 ORTHO05D003693 2.6e-13 79.3 160 33.8
Nitab4.5_0005772g0010 Nicotiana tabacum HOM05D003213 ORTHO05D003693 2.6e-13 79.3 155 33.5
Peaxi162Scf00269g01517 Petunia axillaris HOM05D003213 ORTHO05D003693 2.6e-13 79.3 155 33.5
unitig_8.g3787 Utricularia gibba HOM05D003213 ORTHO05D003693 2.6e-13 79.3 155 33.5
MBI13_g09223_MAGBIO Magnolia biondii HOM05D003213 ORTHO05D003693 3.4e-13 79.0 158 34.8
MSTRG.25587 Avicennia marina HOM05D003213 ORTHO05D003693 4.5e-13 78.6 155 33.5
Ciclev10021533m.g Citrus clementina HOM05D003213 ORTHO05D003693 4.5e-13 78.6 157 33.8
DCAR_000683 Daucus carota HOM05D003213 ORTHO05D003693 4.5e-13 78.6 155 33.5
DCAR_006753 Daucus carota HOM05D003213 ORTHO05D003693 4.5e-13 78.6 155 33.5
Eucgr.D01884 Eucalyptus grandis HOM05D003213 ORTHO05D003693 4.5e-13 78.6 155 32.3
PGR031G0486 Punica granatum HOM05D003213 ORTHO05D003693 4.5e-13 78.6 155 34.8
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 4.5e-13 78.6 155 33.5
MSTRG.12004 Avicennia marina HOM05D003213 ORTHO05D003693 5.8e-13 78.2 155 33.5
CAN.G308.26 Capsicum annuum HOM05D003213 ORTHO05D003693 5.8e-13 78.2 155 32.9
Sopen06g023410 Solanum pennellii HOM05D003213 ORTHO05D003693 5.8e-13 78.2 155 31.6
SGA_v2.0_scaffold253G45113 Striga asiatica HOM05D003213 ORTHO05D003693 7.6e-13 77.8 155 33.5
THA.LOC104813037 Tarenaya hassleriana HOM05D003213 ORTHO05D003693 7.6e-13 77.8 155 32.9
Migut.J01798 Erythranthe guttata HOM05D003213 ORTHO05D003693 9.9e-13 77.4 183 30.6
CSS0033515 Camellia sinensis var. sinensis HOM05D003213 ORTHO05D003693 1.3e-12 77.0 155 32.9
CAN.G100.2 Capsicum annuum HOM05D003213 ORTHO05D003693 1.3e-12 77.0 155 32.3
Sp7g18680 Schrenkiella parvula HOM05D003213 ORTHO05D003693 1.3e-12 77.0 155 35.5
GSVIVG01019026001 Vitis vinifera HOM05D003213 ORTHO05D003693 1.7e-12 76.6 50 76.0
GSVIVG01019802001 Vitis vinifera HOM05D003213 ORTHO05D003693 1.7e-12 76.6 155 34.2
Haze_08903 Corylus avellana HOM05D003213 ORTHO05D003693 2.2e-12 76.3 50 74.0
Migut.A00798 Erythranthe guttata HOM05D003213 ORTHO05D003693 2.2e-12 76.3 155 32.3
Solyc06g064890.4 Solanum lycopersicum HOM05D003213 ORTHO05D003693 2.2e-12 76.3 155 31.0
FvH4_5g01870 Fragaria vesca HOM05D003213 ORTHO05D003693 2.9e-12 75.9 156 34.0
FAN13G0859 Fragaria x ananassa HOM05D003213 ORTHO05D003693 2.9e-12 75.9 156 34.0
FAN18G3554 Fragaria x ananassa HOM05D003213 ORTHO05D003693 2.9e-12 75.9 156 34.0
Rhsim07G0092300 Rhododendron simsii HOM05D003213 ORTHO05D003693 2.9e-12 75.9 155 33.5
Actinidia02027 Actinidia chinensis HOM05D003213 ORTHO05D003693 3.8e-12 75.5 154 32.5
MSTRG.24318 Avicennia marina HOM05D003213 ORTHO05D003693 3.8e-12 75.5 155 32.9
CSS0024384 Camellia sinensis var. sinensis HOM05D003213 ORTHO05D003693 3.8e-12 75.5 155 32.9
Oeu028567.1 Olea europaea HOM05D003213 ORTHO05D003693 3.8e-12 75.5 155 33.5
TAR629G0228 Trochodendron aralioides HOM05D003213 ORTHO05D003693 3.8e-12 75.5 157 33.1
Manes.02G024800 Manihot esculenta HOM05D003213 ORTHO05D003693 4.9e-12 75.1 155 32.3
TWI36G0215 Tripterygium wilfordii HOM05D003213 ORTHO05D003693 4.9e-12 75.1 155 32.3
arahy.Tifrunner.gnm1.ann1.JK8X7C Arachis hypogaea HOM05D003213 ORTHO05D003693 6.4e-12 74.7 157 31.8
arahy.Tifrunner.gnm1.ann1.QX30GY Arachis hypogaea HOM05D003213 ORTHO05D003693 6.4e-12 74.7 157 31.8
Actinidia14539 Actinidia chinensis HOM05D003213 ORTHO05D003693 8.4e-12 74.3 154 32.5
CiPaw.10G013100 Carya illinoinensis HOM05D003213 ORTHO05D003693 8.4e-12 74.3 155 32.3
ClCG07G007970 Citrullus lanatus HOM05D003213 ORTHO05D003693 8.4e-12 74.3 52 69.2
FAN08G1588 Fragaria x ananassa HOM05D003213 ORTHO05D003693 8.4e-12 74.3 156 34.0
Nn8g38712 Nelumbo nucifera HOM05D003213 ORTHO05D003693 8.4e-12 74.3 155 32.3
PSO339G0315 Papaver somniferum HOM05D003213 ORTHO05D003693 1.1e-11 73.9 157 31.8
Haze_09386 Corylus avellana HOM05D003213 ORTHO05D003693 1.4e-11 73.6 50 70.0
Dinv38980 Davidia involucrata HOM05D003213 ORTHO05D003693 1.4e-11 73.6 50 74.0
Hma1.2p1_0514F.1_g169810 Hydrangea macrophylla HOM05D003213 ORTHO05D003693 1.4e-11 73.6 155 32.3
Lj4A550T46 Lonicera japonica HOM05D003213 ORTHO05D003693 1.4e-11 73.6 50 70.0
Lj4A578T54 Lonicera japonica HOM05D003213 ORTHO05D003693 1.4e-11 73.6 50 70.0
Medtr8g096950 Medicago truncatula HOM05D003213 ORTHO05D003693 1.4e-11 73.6 155 32.3
Os10g0397200 Oryza sativa ssp. japonica HOM05D003213 ORTHO05D003693 1.4e-11 73.6 157 31.2
Psat7g035800 Pisum sativum HOM05D003213 ORTHO05D003693 1.4e-11 73.6 155 31.0
TPR.G12978 Trifolium pratense HOM05D003213 ORTHO05D003693 1.4e-11 73.6 155 32.3
Cpa.g.sc87.99 Carica papaya HOM05D003213 ORTHO05D003693 1.9e-11 73.2 155 32.9
Cfa012141 Carpinus fangiana HOM05D003213 ORTHO05D003693 1.9e-11 73.2 155 32.3
FAN04G1619 Fragaria x ananassa HOM05D003213 ORTHO05D003693 1.9e-11 73.2 50 72.0
Lalb_Chr16g0389821 Lupinus albus HOM05D003213 ORTHO05D003693 1.9e-11 73.2 155 32.3
MD06G1076900 Malus domestica HOM05D003213 ORTHO05D003693 1.9e-11 73.2 156 34.0
RcHm_v2.0_Chr7g0198651 Rosa chinensis HOM05D003213 ORTHO05D003693 1.9e-11 73.2 156 33.3
Zm00001eb071210 Zea mays HOM05D003213 ORTHO05D003693 1.9e-11 73.2 157 32.5
Cc08_g14280 Coffea canephora HOM05D003213 ORTHO05D003693 2.4e-11 72.8 155 32.3
Lj4g0009826 Lotus japonicus HOM05D003213 ORTHO05D003693 2.4e-11 72.8 158 31.6
Glyma.08G012100 Glycine max HOM05D003213 ORTHO05D003693 3.2e-11 72.4 155 31.6
arahy.Tifrunner.gnm1.ann1.4S7XPI Arachis hypogaea HOM05D003213 ORTHO05D003693 4.2e-11 72.0 155 31.0
arahy.Tifrunner.gnm1.ann1.91GX53 Arachis hypogaea HOM05D003213 ORTHO05D003693 4.2e-11 72.0 155 31.0
Gohir.A11G021800 Gossypium hirsutum HOM05D003213 ORTHO05D003693 4.2e-11 72.0 157 29.3
Gohir.D11G021500 Gossypium hirsutum HOM05D003213 ORTHO05D003693 4.2e-11 72.0 157 29.3
Gorai.007G022800 Gossypium raimondii HOM05D003213 ORTHO05D003693 4.2e-11 72.0 157 29.3
SalBow6G3200 Salvia bowleyana HOM05D003213 ORTHO05D003693 4.2e-11 72.0 155 30.3
ATR0706G062 Amborella trichopoda HOM05D003213 ORTHO05D003693 5.4e-11 71.6 157 31.2
TWI81G0588 Tripterygium wilfordii HOM05D003213 ORTHO05D003693 7.1e-11 71.2 155 32.3
vmacro13943 Vaccinium macrocarpon HOM05D003213 ORTHO05D003693 7.1e-11 71.2 155 32.3
CANSAT25G0208 Cannabis sativa HOM05D003213 ORTHO05D003693 9.3e-11 70.9 154 32.5
CANSAT80G2251 Cannabis sativa HOM05D003213 ORTHO05D003693 9.3e-11 70.9 154 32.5
AUR62029439 Chenopodium quinoa HOM05D003213 ORTHO05D003693 9.3e-11 70.9 154 33.1
Lalb_Chr09g0325531 Lupinus albus HOM05D003213 ORTHO05D003693 9.3e-11 70.9 155 29.7
Manes.01G064600 Manihot esculenta HOM05D003213 ORTHO05D003693 9.3e-11 70.9 155 31.6
SalBow5G2014 Salvia bowleyana HOM05D003213 ORTHO05D003693 9.3e-11 70.9 155 30.3
SalBow5G2552 Salvia bowleyana HOM05D003213 ORTHO05D003693 9.3e-11 70.9 155 30.3
Glyma.05G205200 Glycine max HOM05D003213 ORTHO05D003693 1.2e-10 70.5 155 31.6
HanXRQChr01g0021601 Helianthus annuus HOM05D003213 ORTHO05D003693 1.2e-10 70.5 157 30.6
Ah.02g112600 Amaranthus hybridus HOM05D003213 ORTHO05D003693 1.6e-10 70.1 157 31.2
Lsat_1_v5_gn_7_82800 Lactuca sativa HOM05D003213 ORTHO05D003693 1.6e-10 70.1 155 30.3
SGA_v2.0_scaffold105G30463 Striga asiatica HOM05D003213 ORTHO05D003693 1.6e-10 70.1 155 31.0
Lalb_Chr16g0377171 Lupinus albus HOM05D003213 ORTHO05D003693 2.1e-10 69.7 155 29.0
Sc07g0009620 Simmondsia chinensis HOM05D003213 ORTHO05D003693 2.1e-10 69.7 67 58.2
AagrBONN_evm.TU.Sc2ySwM_344.156 Anthoceros agrestis HOM05D003213 ORTHO05D003693 2.7e-10 69.3 157 29.3
Hund04873 Selenicereus undatus HOM05D003213 ORTHO05D003693 2.7e-10 69.3 155 31.6
Atru.chr12.1280 Acer truncatum HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 29.0
Atru.chr12.1289 Acer truncatum HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 29.0
Aqoxy7G00384 Aquilegia oxysepala HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 31.6
AUR62020113 Chenopodium quinoa HOM05D003213 ORTHO05D003693 3.5e-10 68.9 154 32.5
Gohir.A08G179800 Gossypium hirsutum HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 29.0
Gohir.D08G198600 Gossypium hirsutum HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 29.0
Gorai.004G209400 Gossypium raimondii HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 29.0
Phvul.002G287100 Phaseolus vulgaris HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 31.0
Thecc.03G274900 Theobroma cacao HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 29.0
VMungo0251G2562 Vigna mungo HOM05D003213 ORTHO05D003693 3.5e-10 68.9 155 31.0
AUR62001667 Chenopodium quinoa HOM05D003213 ORTHO05D003693 4.6e-10 68.6 154 31.8
COL.COLO4_18522 Corchorus olitorius HOM05D003213 ORTHO05D003693 6.0e-10 68.2 155 28.4
Lj2g0020834 Lotus japonicus HOM05D003213 ORTHO05D003693 6.0e-10 68.2 155 29.7
Psat2g181960 Pisum sativum HOM05D003213 ORTHO05D003693 6.0e-10 68.2 155 29.7
ECA236G2163 Erigeron canadensis HOM05D003213 ORTHO05D003693 1.0e-09 67.4 157 30.6
QL12p017921 Quercus lobata HOM05D003213 ORTHO05D003693 1.0e-09 67.4 155 30.3
PSO782G4767 Papaver somniferum HOM05D003213 ORTHO05D003693 1.3e-09 67.0 155 28.4
SEGI_09725 Sequoiadendron giganteum HOM05D003213 ORTHO05D003693 1.3e-09 67.0 157 29.3
Ca_24562_v3 Cicer arietinum L. HOM05D003213 ORTHO05D003693 1.8e-09 66.6 155 29.0
Duzib205G1106 Durio zibethinus HOM05D003213 ORTHO05D003693 1.8e-09 66.6 155 28.4
Eucgr.J02343 Eucalyptus grandis HOM05D003213 ORTHO05D003693 1.8e-09 66.6 58 55.2
Medtr5g010620 Medicago truncatula HOM05D003213 ORTHO05D003693 1.8e-09 66.6 155 29.0
VMungo1215G2126 Vigna mungo HOM05D003213 ORTHO05D003693 1.8e-09 66.6 155 29.0
AagrBONN_evm.TU.Sc2ySwM_228.4384 Anthoceros agrestis HOM05D003213 ORTHO05D003693 3.0e-09 65.9 157 29.9
C07p10080 Brassica napus HOM05D012204 ORTHO05D003693 3.0e-09 65.9 82 50.0
MELO3C016344.2 Cucumis melo HOM05D003213 ORTHO05D003693 3.0e-09 65.9 187 28.9
Duzib084G0581 Durio zibethinus HOM05D003213 ORTHO05D003693 3.0e-09 65.9 155 28.4
Nn3g20000 Nelumbo nucifera HOM05D003213 ORTHO05D003693 3.0e-09 65.9 163 30.7
TPR.G6680 Trifolium pratense HOM05D003213 ORTHO05D003693 3.0e-09 65.9 155 29.7
COL.COLO4_34423 Corchorus olitorius HOM05D003213 ORTHO05D003693 3.9e-09 65.5 72 47.2
Lsat_1_v5_gn_7_84001 Lactuca sativa HOM05D003213 ORTHO05D003693 3.9e-09 65.5 157 28.0
AUR62019502 Chenopodium quinoa HOM05D003213 ORTHO05D003693 5.1e-09 65.1 154 31.8
FAN16G2260 Fragaria x ananassa HOM05D003213 ORTHO05D003693 5.1e-09 65.1 155 31.0
Glyma.01G217900 Glycine max HOM05D003213 ORTHO05D003693 5.1e-09 65.1 155 29.0
Glyma.11G025300 Glycine max HOM05D003213 ORTHO05D003693 5.1e-09 65.1 155 29.0
HanXRQChr01g0003921 Helianthus annuus HOM05D003213 ORTHO05D003693 6.7e-09 64.7 155 29.7
PSO478G0071 Papaver somniferum HOM05D003213 ORTHO05D003693 6.7e-09 64.7 155 29.0
AT4G21010 Arabidopsis thaliana HOM05D003213 ORTHO05D003693 8.7e-09 64.3 86 44.2
Phvul.002G155700 Phaseolus vulgaris HOM05D003213 ORTHO05D003693 8.7e-09 64.3 155 28.4
BolC1t04145H Brassica oleracea HOM05D003213 ORTHO05D003693 1.1e-08 63.9 71 54.9
Sabra01G0081400 Salix brachista HOM05D003213 ORTHO05D003693 1.1e-08 63.9 142 30.3
FvH4_3g33500 Fragaria vesca HOM05D003213 ORTHO05D003693 1.5e-08 63.5 155 30.3
AL7G33140 Arabidopsis lyrata HOM05D003213 ORTHO05D003693 5.6e-08 61.6 153 31.4
PSO541G4836 Papaver somniferum HOM05D003213 ORTHO05D003693 5.6e-08 61.6 69 47.8
Dinv15154 Davidia involucrata HOM05D003213 ORTHO05D003693 7.4e-08 61.2 89 39.3
FAN11G0059 Fragaria x ananassa HOM05D003213 ORTHO05D003693 7.4e-08 61.2 155 29.7
Mapoly0033s0069 Marchantia polymorpha HOM05D003213 ORTHO05D003693 9.6e-08 60.8 155 27.1
Ah.02g114170 Amaranthus hybridus HOM05D003213 ORTHO05D003693 1.6e-07 60.1 130 31.5
PSO675G3746 Papaver somniferum HOM05D003213 ORTHO05D003693 2.1e-07 59.7 69 47.8
RcHm_v2.0_Chr5g0060921 Rosa chinensis HOM05D003213 ORTHO05D003693 3.7e-07 58.9 155 29.7
Hund18853 Selenicereus undatus HOM05D003213 ORTHO05D003693 3.7e-07 58.9 141 29.1
Pp3c12_26130 Physcomitrium patens HOM05D003213 ORTHO05D003693 6.2e-07 58.2 52 53.8
arahy.Tifrunner.gnm1.ann1.8PBF31 Arachis hypogaea HOM05D003213 ORTHO05D003693 8.1e-07 57.8 46 60.9
ECA233G5713 Erigeron canadensis HOM05D003213 ORTHO05D003693 6.9e-06 54.7 75 42.7
Actinidia05218 Actinidia chinensis HOM05D003213 ORTHO05D003693 9.0e-06 54.3 154 27.9


User provided reference genes

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