Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35588 Brassica carinata HOM05D009371 ORTHO05D011485 8.3e-197 690.3 371 100.0
C07p13220 Brassica napus HOM05D009371 ORTHO05D011485 1.0e-194 683.3 367 100.0
BolC7t41814H Brassica oleracea HOM05D009371 ORTHO05D011485 1.0e-194 683.3 367 100.0
A07p08480 Brassica napus HOM05D009371 ORTHO05D011485 2.2e-173 612.5 370 87.8
BraA07t28633Z Brassica rapa HOM05D009371 ORTHO05D011485 4.2e-172 608.2 370 91.6
BcaB06g26555 Brassica carinata HOM05D009371 ORTHO05D011485 9.1e-119 431.0 356 70.5
A01p31190 Brassica napus HOM05D009371 ORTHO05D011485 4.6e-54 216.1 350 43.4
BraA01t03244Z Brassica rapa HOM05D009371 ORTHO05D011485 4.6e-54 216.1 350 43.4
BolC1t03928H Brassica oleracea HOM05D009371 ORTHO05D011485 9.6e-52 208.4 350 43.1
BcaB04g20415 Brassica carinata HOM05D009371 ORTHO05D011485 1.6e-51 207.6 327 45.0
C01p39740 Brassica napus HOM05D009371 ORTHO05D011485 1.6e-51 207.6 350 43.1
Sp3g21960 Schrenkiella parvula HOM05D009371 ORTHO05D011485 6.9e-50 202.2 356 41.3
BcaB04g20406 Brassica carinata HOM05D009371 ORTHO05D011485 3.8e-48 196.4 281 48.4
BolC1t03918H Brassica oleracea HOM05D009371 ORTHO05D011485 3.2e-47 193.4 341 40.8
A01p31120 Brassica napus HOM05D009371 ORTHO05D011485 9.3e-47 191.8 343 40.2
BraA01t03236Z Brassica rapa HOM05D009371 ORTHO05D011485 9.3e-47 191.8 343 40.2
Thhalv10002921m.g Eutrema salsugineum HOM05D009371 ORTHO05D011485 7.9e-46 188.7 355 41.7
C01p39660 Brassica napus HOM05D009371 ORTHO05D011485 3.3e-44 183.3 338 39.9
AL3G38920 Arabidopsis lyrata HOM05D009371 ORTHO05D011485 2.7e-38 163.7 355 36.3
AT3G24260 Arabidopsis thaliana HOM05D009371 ORTHO05D011485 6.1e-30 136.0 225 40.0
AL3G38910 Arabidopsis lyrata HOM05D009371 ORTHO05D011485 3.0e-29 133.7 213 41.8
Sp3g21640 Schrenkiella parvula HOM05D009371 ORTHO05D011485 3.3e-28 130.2 370 31.4
AT3G28870 Arabidopsis thaliana HOM05D009371 ORTHO05D011485 1.2e-22 111.7 133 48.1
Carub.0003s2422 Capsella rubella HOM05D009371 ORTHO05D011485 2.2e-19 100.9 214 35.0
THA.LOC104808708 Tarenaya hassleriana HOM05D009371 ORTHO05D011485 2.6e-17 94.0 201 35.8
BcaC06g35589 Brassica carinata HOM05D009371 ORTHO05D011485 3.6e-14 83.6 139 41.7
Aa31LG8G10500 Aethionema arabicum HOM05D009371 ORTHO05D011485 1.4e-13 81.6 131 36.6
Aa31LG8G10520 Aethionema arabicum HOM05D009371 ORTHO05D011485 2.8e-11 73.9 118 36.4
COL.COLO4_37017 Corchorus olitorius HOM05D000629 ORTHO05D000576 1.5e-07 61.6 172 30.8
unitig_744.g24345 Utricularia gibba HOM05D000629 ORTHO05D000576 2.5e-07 60.8 172 28.5
A02p02840 Brassica napus HOM05D000629 ORTHO05D000576 4.2e-07 60.1 173 31.2
BraA02t05257Z Brassica rapa HOM05D000629 ORTHO05D000576 4.2e-07 60.1 173 31.2
ECA238G1737 Erigeron canadensis HOM05D000629 ORTHO05D000576 4.2e-07 60.1 232 26.7
vmacro18221 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 7.2e-07 59.3 172 30.2
unitig_21.g20510 Utricularia gibba HOM05D000629 ORTHO05D000576 1.2e-06 58.5 168 28.6
C02p07460 Brassica napus HOM05D000629 ORTHO05D000576 1.6e-06 58.2 173 31.2
BolC2t06677H Brassica oleracea HOM05D000629 ORTHO05D000576 1.6e-06 58.2 173 31.2
CAN.G1128.14 Capsicum annuum HOM05D000629 ORTHO05D000576 2.1e-06 57.8 172 27.9
Lsat_1_v5_gn_2_90740 Lactuca sativa HOM05D000629 ORTHO05D000576 2.1e-06 57.8 232 25.0
Lj4g0011434 Lotus japonicus HOM05D000629 ORTHO05D000576 2.7e-06 57.4 172 29.7
SGA_v2.0_scaffold166G38313 Striga asiatica HOM05D000629 ORTHO05D000576 2.7e-06 57.4 162 28.4
Aa31LG11G14500 Aethionema arabicum HOM05D000629 ORTHO05D000576 3.6e-06 57.0 221 28.1
arahy.Tifrunner.gnm1.ann1.38NBAQ Arachis hypogaea HOM05D000629 ORTHO05D000576 3.6e-06 57.0 172 29.7
arahy.Tifrunner.gnm1.ann1.74EE6B Arachis hypogaea HOM05D000629 ORTHO05D000576 3.6e-06 57.0 172 29.1
arahy.Tifrunner.gnm1.ann1.MG25IW Arachis hypogaea HOM05D000629 ORTHO05D000576 3.6e-06 57.0 172 29.1
arahy.Tifrunner.gnm1.ann1.TFL5QC Arachis hypogaea HOM05D000629 ORTHO05D000576 3.6e-06 57.0 172 29.7
Peaxi162Scf00059g00016 Petunia axillaris HOM05D000629 ORTHO05D000576 3.6e-06 57.0 194 26.8
Solyc02g067570.3 Solanum lycopersicum HOM05D000629 ORTHO05D000576 3.6e-06 57.0 172 27.3
C03p07890 Brassica napus HOM05D000629 ORTHO05D000576 4.7e-06 56.6 221 28.5
BolC3t13287H Brassica oleracea HOM05D000629 ORTHO05D000576 4.7e-06 56.6 221 28.5
Gohir.D11G072600 Gossypium hirsutum HOM05D000629 ORTHO05D000576 4.7e-06 56.6 174 29.9
Gorai.007G077800 Gossypium raimondii HOM05D000629 ORTHO05D000576 4.7e-06 56.6 174 29.9
TAR622G0057 Trochodendron aralioides HOM05D000629 ORTHO05D000576 4.7e-06 56.6 202 26.7
A03p06900 Brassica napus HOM05D000629 ORTHO05D000576 6.1e-06 56.2 194 29.4
BraA03t10012Z Brassica rapa HOM05D000629 ORTHO05D000576 6.1e-06 56.2 194 29.4
Thecc.04G065500 Theobroma cacao HOM05D000629 ORTHO05D000576 6.1e-06 56.2 174 29.3
Migut.M00134 Erythranthe guttata HOM05D000629 ORTHO05D000576 8.0e-06 55.8 174 27.0
Gohir.A11G068400 Gossypium hirsutum HOM05D000629 ORTHO05D000576 8.0e-06 55.8 174 29.3
HanXRQChr12g0385641 Helianthus annuus HOM05D000629 ORTHO05D000576 8.0e-06 55.8 174 28.2
Lsat_1_v5_gn_3_49260 Lactuca sativa HOM05D000629 ORTHO05D000576 8.0e-06 55.8 172 26.7
Lj2g0011859 Lotus japonicus HOM05D000629 ORTHO05D000576 8.0e-06 55.8 175 29.7
Rhsim08G0062900 Rhododendron simsii HOM05D000629 ORTHO05D000576 8.0e-06 55.8 225 26.2


User provided reference genes

Program Settings