Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1454.9 743 100.0
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1431.4 743 98.3
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 0.0e+00 1430.2 743 98.1
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1372.5 747 95.2
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 0.0e+00 1365.5 747 94.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1307.4 751 90.9
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1248.4 758 85.5
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 0.0e+00 1246.1 761 85.3
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 0.0e+00 1236.5 759 85.6
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 0.0e+00 1218.4 762 84.3
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 0.0e+00 1211.1 757 84.4
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 0.0e+00 1139.0 751 79.5
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 0.0e+00 1117.8 657 88.0
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 0.0e+00 1093.6 750 76.9
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 2.8e-308 1061.6 758 73.6
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.0e-307 1057.7 758 73.4
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 4.4e-306 1054.3 758 72.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.2e-304 1048.1 766 72.3
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 5.4e-304 1047.3 756 72.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.0e-303 1045.4 762 71.7
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 5.0e-302 1040.8 754 72.5
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.3e-301 1037.7 753 71.8
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.0e-299 1033.1 752 72.6
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.3e-299 1031.9 756 72.5
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 5.2e-299 1030.8 756 72.4
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.2e-298 1029.6 759 71.5
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 753 71.7
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 753 72.4
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.9e-297 1025.0 757 71.6
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 3.7e-297 1024.6 757 70.3
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 755 71.0
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.8e-295 1016.9 757 71.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.3e-294 1016.1 751 71.2
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 3.9e-294 1014.6 745 70.3
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 5.0e-294 1014.2 751 70.8
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 1.1e-293 1013.1 755 70.5
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.5e-293 1012.7 750 70.5
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 755 70.2
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 9.5e-293 1010.0 746 70.4
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.6e-292 1009.2 749 70.5
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 2.1e-292 1008.8 756 70.1
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 4.7e-292 1007.7 754 70.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 8.1e-292 1006.9 755 70.7
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 1.4e-291 1006.1 747 70.4
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.4e-291 1006.1 757 69.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.8e-291 1005.7 755 70.7
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 4.0e-291 1004.6 757 70.3
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.2e-291 1004.2 757 69.5
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 8.9e-291 1003.4 753 70.8
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 3.4e-290 1001.5 752 69.8
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 4.4e-290 1001.1 747 69.2
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 7.5e-290 1000.3 751 71.0
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 6.4e-289 997.3 745 71.0
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 6.4e-289 997.3 742 70.5
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 3.2e-288 995.0 753 70.1
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 7.1e-288 993.8 754 70.2
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-287 993.0 782 68.4
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 2.1e-287 992.3 752 70.5
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 4.6e-287 991.1 761 68.2
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 6.0e-287 990.7 753 69.5
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 6.0e-287 990.7 798 66.2
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.3e-286 988.8 755 70.2
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.0e-286 988.4 793 67.1
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.5e-285 986.1 790 67.6
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.5e-285 985.3 742 70.9
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 7.3e-285 983.8 753 70.3
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 9.5e-285 983.4 754 69.8
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.6e-284 982.6 749 69.7
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.7e-284 981.1 748 69.8
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 4.7e-284 981.1 743 69.9
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.4e-283 979.5 747 69.1
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 3.1e-283 978.4 760 69.1
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 4.0e-283 978.0 750 68.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.2e-282 976.5 752 69.8
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 5.8e-282 974.2 752 68.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.2e-281 972.2 777 67.8
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.9e-281 971.8 753 69.7
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.2e-279 966.5 758 67.8
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.7e-279 965.3 773 66.5
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 4.6e-279 964.5 751 68.4
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 3.0e-278 961.8 744 67.3
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.8e-275 952.6 756 65.2
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 7.6e-274 947.2 700 71.3
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.2e-273 945.7 743 66.8
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 4.9e-273 944.5 755 66.4
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 8.7e-270 933.7 713 69.8
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 5.6e-269 931.0 712 68.7
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.7e-262 909.4 654 72.8
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 5.1e-262 907.9 749 66.5
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.1e-261 906.7 648 73.5
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 5.3e-259 897.9 701 67.6
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 6.5e-249 864.4 836 56.9
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 1.8e-243 846.3 747 60.1
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.4e-240 836.6 749 59.0
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.2e-222 775.0 545 73.4
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 4.8e-212 741.9 510 75.7
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.0e-210 736.5 718 57.9
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 5.4e-203 711.8 557 67.5
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 5.5e-200 701.8 608 63.5
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.2e-194 684.1 561 65.8
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 7.3e-184 648.3 622 56.4
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 9.2e-171 604.7 682 51.9
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 8.6e-169 598.2 520 64.0
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.7e-159 565.8 431 68.2
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 4.4e-157 559.3 441 66.0
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 5.6e-152 542.3 430 65.1
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.2e-149 534.6 427 66.3
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.1e-134 485.0 431 56.4
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.1e-134 483.4 423 61.9
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 4.5e-133 479.6 433 56.4
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.1e-123 448.4 403 59.8
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 5.3e-118 429.5 356 63.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.2e-116 424.1 356 62.6
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 5.5e-115 419.5 497 50.3
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.7e-100 371.3 223 83.4
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 2.1e-90 337.8 261 69.7
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 2.2e-87 327.8 208 78.8
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 3.6e-66 257.3 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 2.9e-63 247.7 169 72.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.1e-61 241.5 231 58.4
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 5.0e-60 236.9 140 86.4
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.1e-49 202.6 308 43.2
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 4.4e-48 197.2 142 71.1
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 1.7e-47 195.3 157 64.3
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.9e-47 194.5 132 73.5
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 2.5e-43 181.4 101 86.1
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.2e-42 179.1 301 42.5
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.1e-41 176.0 142 66.2
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.1e-41 176.0 106 83.0
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 6.2e-34 150.2 135 59.3
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 4.0e-33 147.5 93 78.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 1.1e-30 139.4 292 34.2
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.3e-28 132.5 153 51.6
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.3e-28 131.7 93 71.0
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.3e-26 125.9 148 50.7
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.4e-25 121.7 86 70.9
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.9e-20 104.4 119 51.3
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 8.7e-20 103.2 142 50.0
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.9e-19 102.1 71 69.0
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 9.6e-19 99.8 143 46.9
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 3.4e-16 91.3 52 82.7
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.5e-16 90.9 57 68.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 5.8e-16 90.5 53 83.0
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.9e-15 87.4 57 64.9
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 6.5e-15 87.0 52 80.8
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 9.7e-11 73.2 80 50.0
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 1.6e-10 72.4 122 36.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 1.8e-09 68.9 43 69.8
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.1e-09 67.8 74 50.0
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.2e-08 66.2 36 91.7
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 7.7e-08 63.5 54 61.1
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.8 29 96.6


User provided reference genes

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