Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 0.0e+00 1682.2 851 100.0
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 0.0e+00 1388.6 711 99.9
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 0.0e+00 1385.5 711 99.7
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 0.0e+00 1134.0 739 84.6
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 0.0e+00 1127.5 737 84.5
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-287 993.4 897 65.6
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.3e-277 959.9 818 69.4
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.9e-266 921.8 774 68.5
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.9e-246 854.7 792 63.6
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.1e-236 823.9 797 62.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.6e-209 733.0 1034 48.5
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 4.5e-206 722.2 794 57.4
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 3.1e-146 523.5 454 65.0
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.2e-92 345.5 719 36.9
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 8.3e-91 339.3 817 34.0
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.0e-88 332.4 802 34.3
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.5e-87 327.8 723 34.6
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 2.8e-86 324.3 835 33.3
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.0e-85 320.9 845 33.3
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 8.9e-85 319.3 750 33.6
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.0e-84 318.2 823 33.7
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.4e-84 317.0 750 32.9
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 9.8e-84 315.8 783 31.8
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.7e-83 315.1 746 33.8
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.9e-83 314.3 702 35.3
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-83 313.9 885 31.9
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 6.3e-83 313.2 671 36.1
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 7.0e-82 309.7 857 32.1
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.0e-82 309.7 892 30.9
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 4.6e-81 307.0 845 32.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 5.9e-81 306.6 829 32.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.7e-80 305.1 803 32.9
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.3e-80 304.7 909 31.2
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 2.9e-80 304.3 814 32.8
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.9e-80 303.9 849 33.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 8.6e-80 302.8 792 31.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.1e-79 302.4 723 32.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.1e-79 302.4 732 33.2
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.5e-79 302.0 704 33.4
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.9e-79 301.6 834 32.9
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.6e-78 298.5 732 32.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 8.0e-78 296.2 812 32.1
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.8e-76 290.0 733 34.2
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 5.8e-76 290.0 781 31.4
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.7e-75 288.5 732 32.5
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.7e-75 288.5 773 31.4
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.2e-75 288.1 728 33.1
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.2e-75 288.1 745 32.8
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.9e-75 287.7 766 33.2
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 4.9e-75 287.0 733 33.6
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-74 285.0 843 30.5
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.4e-74 284.6 692 32.8
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 3.2e-74 284.3 732 33.5
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 4.1e-74 283.9 836 31.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 7.0e-74 283.1 809 32.4
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 6.0e-73 280.0 730 33.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 7.8e-73 279.6 765 32.8
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 5.0e-72 276.9 695 33.7
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.1e-71 275.8 718 33.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-71 275.8 618 32.8
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.3e-71 274.2 748 31.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 9.5e-71 272.7 607 35.6
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.2e-70 270.0 851 30.4
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 6.2e-70 270.0 700 32.3
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.8e-69 268.5 770 32.2
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.3e-69 268.1 840 31.3
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 4.0e-69 267.3 865 29.9
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.0e-68 265.0 767 30.4
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 2.6e-68 264.6 722 30.7
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.6e-68 264.6 732 32.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 7.5e-68 263.1 726 30.9
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.9e-67 261.2 796 29.9
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 3.7e-67 260.8 918 28.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.7e-67 260.8 712 31.3
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.5e-63 248.8 766 30.5
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.6e-62 244.2 842 30.4
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 4.7e-62 243.8 754 29.8
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 8.9e-61 239.6 757 29.2
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.4e-60 237.7 897 28.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 5.8e-60 236.9 234 55.1
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.2e-58 231.1 716 28.2
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 4.1e-58 230.7 708 31.5
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.1e-58 230.7 843 28.4
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 7.1e-58 229.9 775 31.1
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.1e-57 228.4 794 28.0
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.5e-57 227.6 675 28.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 6.0e-57 226.9 882 27.4
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.9e-55 221.9 832 27.8
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 7.3e-55 219.9 660 30.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.8e-54 218.0 723 31.0
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.2e-53 213.8 863 28.2
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 8.9e-53 213.0 560 30.4
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-52 212.6 611 30.9
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-44 185.7 644 32.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.4e-43 179.9 515 29.7
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.7e-41 174.9 273 39.9
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 4.6e-41 174.1 753 24.7
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 9.6e-39 166.4 456 30.9
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.6e-38 164.5 657 26.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.0e-37 161.0 455 29.2
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 6.9e-37 160.2 361 32.7
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-36 158.7 596 28.4
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 7.6e-36 156.8 620 27.9
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 9.3e-34 149.8 142 53.5
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 3.0e-32 144.8 602 25.6
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.5e-31 141.7 625 29.3
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.0e-29 134.4 405 30.1
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 2.6e-28 131.7 263 39.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 3.8e-27 127.9 141 46.1
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 8.4e-27 126.7 140 45.7
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.2e-26 124.4 167 40.7
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.1e-25 122.1 140 44.3
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.3e-24 119.4 617 26.7
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.9e-24 117.9 139 45.3
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-21 109.8 336 32.1
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 3.1e-21 108.2 650 23.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.2e-20 106.3 101 51.5
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 3.4e-20 104.8 296 34.5
AL8G16650 Arabidopsis lyrata HOM05D005259 ORTHO05D006402 1.3e-19 102.8 197 46.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.7e-19 102.4 120 47.5
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.7e-19 102.4 109 43.1
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.1e-17 95.5 106 44.3
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.1e-17 95.5 108 43.5
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.3e-16 92.8 460 27.8
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.3e-16 92.0 162 34.6
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.5e-15 89.4 99 44.4
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.6e-14 85.9 58 65.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 8.2e-14 83.6 130 44.6
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.7e-11 75.9 211 37.0
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.2e-10 71.6 155 36.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.2e-06 58.9 67 44.8
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.2e-06 58.9 299 25.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 3.7e-06 58.2 412 24.8
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 6.3e-06 57.4 66 47.0


User provided reference genes

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