Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34219 Brassica carinata HOM05D000104 ORTHO05D004024 2.6e-270 934.9 494 100.0
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 1.0e-133 481.1 706 47.7
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 1.3e-133 480.7 707 47.5
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 5.6e-124 448.7 692 47.3
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 1.9e-116 423.7 702 45.2
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 7.1e-103 378.6 716 41.5
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 1.8e-101 374.0 715 41.4
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 5.1e-101 372.5 713 40.3
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 5.1e-101 372.5 712 43.0
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.3e-99 367.9 715 41.1
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 1.3e-99 367.9 710 41.3
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 1.1e-95 354.8 709 40.8
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 1.4e-95 354.4 707 41.4
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 4.2e-95 352.8 400 56.8
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 9.1e-90 335.1 712 38.8
C07p31550 Brassica napus HOM05D000104 ORTHO05D004024 5.9e-89 332.4 503 48.3
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 1.9e-87 327.4 709 40.2
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 1.6e-86 324.3 533 45.0
C03p30340 Brassica napus HOM05D000104 ORTHO05D004024 1.4e-74 284.6 577 39.7
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 3.5e-73 280.0 722 35.7
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.3e-48 198.4 637 32.2
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 2.0e-41 174.5 736 27.7
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 7.8e-41 172.6 396 36.1
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 2.3e-40 171.0 384 35.2
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 4.3e-39 166.8 397 33.8
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 4.3e-39 166.8 741 27.3
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 4.3e-39 166.8 373 36.5
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 6.2e-38 162.9 738 28.0
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 6.2e-38 162.9 642 29.0
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 8.0e-38 162.5 409 35.5
COL.COLO4_12729 Corchorus olitorius HOM05D000104 ORTHO05D004024 1.8e-37 161.4 708 28.5
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 5.2e-37 159.8 483 32.9
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 6.8e-37 159.5 749 27.4
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 8.9e-37 159.1 366 37.2
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.9e-37 159.1 729 27.0
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 1.2e-36 158.7 455 33.0
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 2.6e-36 157.5 743 26.1
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 5.8e-36 156.4 410 34.4
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.3e-35 155.2 400 34.5
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 1.3e-35 155.2 455 32.7
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.3e-35 155.2 730 27.0
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 1.7e-35 154.8 483 32.3
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.7e-35 154.8 743 27.3
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.7e-35 154.8 409 34.2
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.7e-35 154.8 737 27.4
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 1.7e-35 154.8 743 28.0
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 2.2e-35 154.5 457 33.3
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 2.9e-35 154.1 743 28.0
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 3.7e-35 153.7 751 26.6
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 3.7e-35 153.7 398 35.2
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 4.9e-35 153.3 449 32.1
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.4e-35 152.9 730 28.2
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.3e-35 152.5 409 34.2
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.3e-35 152.5 736 28.3
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.4e-34 151.0 731 27.6
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 9.2e-34 149.1 408 32.8
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 1.2e-33 148.7 429 33.1
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.6e-33 148.3 735 26.4
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 2.1e-33 147.9 453 31.3
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.7e-33 147.5 413 32.9
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 3.5e-33 147.1 413 33.2
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.6e-33 146.7 413 32.4
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 6.0e-33 146.4 396 32.8
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 7.8e-33 146.0 409 31.1
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 1.0e-32 145.6 449 31.4
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.7e-32 144.8 413 32.2
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.7e-32 144.8 413 32.2
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 1.7e-32 144.8 751 26.1
Lalb_Chr17g0339491 Lupinus albus HOM05D000104 ORTHO05D004024 2.3e-32 144.4 456 32.2
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 3.0e-32 144.1 393 32.6
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 3.9e-32 143.7 395 33.2
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.9e-32 143.7 413 32.2
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 3.9e-32 143.7 433 33.0
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 3.9e-32 143.7 401 32.4
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 5.1e-32 143.3 413 32.4
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 5.1e-32 143.3 553 28.9
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 8.6e-32 142.5 402 32.3
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 8.6e-32 142.5 459 30.1
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.1e-31 142.1 465 30.8
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.5e-31 141.7 755 26.1
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 3.3e-31 140.6 408 32.6
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 7.3e-31 139.4 753 26.6
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 7.3e-31 139.4 414 31.4
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.2e-30 138.7 414 32.4
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 2.8e-30 137.5 750 26.9
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 3.6e-30 137.1 746 27.3
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 4.7e-30 136.7 401 32.9
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 6.2e-30 136.3 434 31.1
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 8.1e-30 136.0 747 25.6
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 1.1e-29 135.6 399 34.3
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 1.4e-29 135.2 398 30.7
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.4e-29 135.2 723 26.1
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 1.8e-29 134.8 397 33.2
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 3.1e-29 134.0 406 31.5
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 4.0e-29 133.7 634 27.6
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 4.0e-29 133.7 412 31.3
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 6.8e-29 132.9 743 26.4
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 8.9e-29 132.5 398 30.4
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 8.9e-29 132.5 744 26.2
VMungo1383G0174 Vigna mungo HOM05D000104 ORTHO05D004024 8.9e-29 132.5 429 31.2
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 1.2e-28 132.1 419 31.0
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.5e-28 131.7 431 31.8
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 2.6e-28 131.0 430 31.9
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 3.4e-28 130.6 455 31.6
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 4.4e-28 130.2 406 32.0
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 5.8e-28 129.8 405 32.3
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 1.3e-27 128.6 402 31.6
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.2e-27 127.9 399 31.3
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 2.9e-27 127.5 395 30.6
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 2.9e-27 127.5 399 32.1
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 4.9e-27 126.7 415 31.3
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 6.4e-27 126.3 429 30.8
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 8.3e-27 125.9 373 33.2
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.1e-26 125.6 392 32.4
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 2.4e-26 124.4 541 27.7
Rhsim01G0163000 Rhododendron simsii HOM05D000104 ORTHO05D004024 2.4e-26 124.4 671 27.3
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 5.4e-26 123.2 397 32.7
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 2.1e-25 121.3 355 31.8
HanXRQChr16g0522401 Helianthus annuus HOM05D000104 ORTHO05D004024 2.1e-25 121.3 355 31.8
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 3.5e-25 120.6 592 26.5
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 7.8e-25 119.4 731 26.3
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 7.8e-25 119.4 417 30.9
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 1.0e-24 119.0 406 30.8
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 1.3e-24 118.6 466 29.8
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 1.3e-24 118.6 468 28.0
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 5.1e-24 116.7 464 28.4
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 6.6e-24 116.3 398 30.9
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 6.6e-24 116.3 687 25.3
CDE02G2573 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 1.1e-23 115.5 404 30.7
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 1.5e-23 115.2 737 26.9
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 3.3e-23 114.0 403 31.8
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 7.3e-23 112.8 415 31.3
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 2.8e-22 110.9 732 25.0
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 6.2e-22 109.8 537 28.5
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 1.1e-21 109.0 451 29.3
Oeu060227.1 Olea europaea HOM05D000104 ORTHO05D004024 8.9e-21 105.9 352 30.4
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 1.5e-20 105.1 85 63.5
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 5.8e-20 103.2 392 29.6
Os02g0114033 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 5.8e-20 103.2 368 31.0
Dinv43832 Davidia involucrata HOM05D000104 ORTHO05D004024 7.6e-20 102.8 545 26.6
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.3e-19 102.1 296 34.1
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 1.1e-18 99.0 497 28.0
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 1.9e-18 98.2 65 70.8
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 4.2e-18 97.1 65 67.7
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 3.5e-17 94.0 65 70.8
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 6.0e-17 93.2 313 34.5
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.0e-16 92.4 65 69.2
HPP92_025793 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.0e-16 92.4 65 69.2
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 2.3e-16 91.3 399 28.3
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 6.9e-13 79.7 65 61.5
Pp3c13_14440 Physcomitrium patens HOM05D000104 ORTHO05D004024 2.0e-12 78.2 115 43.5
Pp3c3_15820 Physcomitrium patens HOM05D000104 ORTHO05D004024 2.6e-12 77.8 115 41.7
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 4.2e-10 70.5 107 38.3
SEGI_24766 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 3.0e-08 64.3 71 50.7
MBI17_g33791_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 4.3e-07 60.5 241 29.0
unitig_22.g5349 Utricularia gibba HOM05D000104 ORTHO05D017821 2.1e-06 58.2 184 33.2
unitig_8.g3795 Utricularia gibba HOM05D000104 ORTHO05D017821 2.1e-06 58.2 148 35.1
HPP92_025792 Vanilla planifolia HOM05D000104 ORTHO05D017821 2.1e-06 58.2 120 38.3


User provided reference genes

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