Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.2e-36 156.0 79 100.0
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.3e-11 72.8 38 94.7
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.8e-11 72.4 38 92.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.1e-11 70.9 38 86.8
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 6.7e-11 70.5 38 86.8
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 6.7e-11 70.5 41 82.9
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 8.7e-11 70.1 41 82.9
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.1e-10 69.7 77 51.9
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.1e-10 69.7 41 80.5
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 1.1e-10 69.7 38 84.2
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.5e-10 69.3 38 86.8
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.9e-10 68.9 41 82.9
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.9e-10 68.9 41 82.9
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 86.8
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 86.8
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 86.8
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 86.8
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 86.8
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 86.8
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.9e-10 68.9 41 82.9
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.9e-10 68.9 41 80.5
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 84.2
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.9e-10 68.9 35 91.4
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.9e-10 68.9 38 84.2
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.9e-10 68.9 41 80.5
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.5e-10 68.6 42 76.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.5e-10 68.6 42 76.2
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.5e-10 68.6 38 84.2
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.5e-10 68.6 38 86.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.5e-10 68.6 38 86.8
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.3e-10 68.2 38 84.2
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.3e-10 68.2 38 86.8
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 3.3e-10 68.2 41 78.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.3e-10 67.8 38 84.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 4.3e-10 67.8 38 84.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 4.3e-10 67.8 40 80.0
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.3e-10 67.8 41 80.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 5.6e-10 67.4 38 81.6
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 5.6e-10 67.4 38 81.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 5.6e-10 67.4 41 80.5
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 5.6e-10 67.4 41 80.5
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 5.6e-10 67.4 41 80.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 5.6e-10 67.4 41 80.5
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 7.4e-10 67.0 38 81.6
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 78.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 78.0
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 78.0
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 78.0
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 75.6
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 78.0
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 7.4e-10 67.0 41 78.0
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.3e-09 66.2 41 75.6
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.3e-09 66.2 48 66.7
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-09 66.2 41 80.5
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-09 66.2 41 80.5
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-09 66.2 41 80.5
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.6e-09 65.9 44 72.7
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.6e-09 65.9 38 84.2
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.6e-09 65.9 38 84.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.6e-09 65.9 38 81.6
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.1e-09 65.5 41 75.6
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 2.1e-09 65.5 41 75.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 2.8e-09 65.1 41 78.0
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.8e-09 65.1 41 80.5
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.8e-09 65.1 38 78.9
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.8e-09 65.1 35 85.7
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.8e-09 65.1 40 75.0
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 3.7e-09 64.7 40 77.5
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 4.8e-09 64.3 38 76.3
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 4.8e-09 64.3 38 78.9
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 4.8e-09 64.3 41 78.0
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 4.8e-09 64.3 36 83.3
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 4.8e-09 64.3 38 78.9
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 6.2e-09 63.9 35 82.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.2e-09 63.9 35 85.7
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 6.2e-09 63.9 41 73.2
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.1e-09 63.5 41 78.0
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 8.1e-09 63.5 35 82.9
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.1e-08 63.2 38 78.9
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.1e-08 63.2 38 78.9
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.1e-08 63.2 38 76.3
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.1e-08 63.2 36 83.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.1e-08 63.2 38 76.3
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.1e-08 63.2 41 75.6
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.1e-08 63.2 35 82.9
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 1.1e-08 63.2 35 82.9
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.1e-08 63.2 38 76.3
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.4e-08 62.8 38 73.7
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.4e-08 62.8 38 73.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-08 62.8 35 82.9
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-08 62.8 35 82.9
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.8e-08 62.4 40 72.5
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.8e-08 62.4 40 77.5
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.8e-08 62.4 35 82.9
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.4e-08 62.0 41 78.0
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.4e-08 62.0 44 65.9
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 2.4e-08 62.0 38 76.3
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.4e-08 62.0 41 73.2
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.4e-08 62.0 38 76.3
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.1e-08 61.6 41 73.2
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.1e-08 61.6 40 72.5
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 4.0e-08 61.2 38 73.7
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.3e-08 60.8 41 73.2
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.3e-08 60.8 41 73.2
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.3e-08 60.8 41 73.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 5.3e-08 60.8 38 71.1
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.3e-08 60.8 41 70.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.3e-08 60.8 41 70.7
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 5.3e-08 60.8 38 71.1
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.9e-08 60.5 41 65.9
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 6.9e-08 60.5 41 70.7
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 9.0e-08 60.1 38 71.1
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.2e-07 59.7 38 71.1
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-07 59.7 38 71.1
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.5e-07 59.3 41 68.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.6e-07 58.5 35 80.0
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.6e-07 58.5 41 70.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.6e-07 58.5 38 71.1
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 2.6e-07 58.5 30 86.7
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.4e-07 58.2 38 65.8
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 5.8e-07 57.4 38 71.1
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 5.8e-07 57.4 42 61.9
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 5.8e-07 57.4 38 68.4
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 7.6e-07 57.0 38 63.2
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 7.6e-07 57.0 41 65.9
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 7.6e-07 57.0 41 65.9
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 7.6e-07 57.0 41 65.9
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 9.9e-07 56.6 40 67.5
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 9.9e-07 56.6 40 67.5
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.7e-06 55.8 39 69.2
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.2e-06 55.5 38 68.4
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.2e-06 55.5 38 68.4
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 3.8e-06 54.7 38 68.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.8e-06 54.7 38 65.8


User provided reference genes

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