Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 2.2e-97 359.0 183 100.0
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 2.2e-97 359.0 183 100.0
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 2.2e-97 359.0 183 100.0
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 8.5e-94 347.1 183 95.1
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 8.5e-94 347.1 183 95.1
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 4.8e-89 331.3 191 89.5
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.5e-87 325.1 182 87.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.9e-86 322.0 182 86.3
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.2e-84 316.6 182 84.6
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.5e-82 309.7 181 81.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 81.9
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 4.1e-80 301.6 182 79.7
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.4e-80 301.2 182 79.1
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.3e-78 296.6 182 78.6
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.7e-78 296.2 180 79.4
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.3e-78 295.8 182 78.0
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.8e-78 295.0 182 78.0
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.1e-77 293.5 183 79.2
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 3.3e-77 292.0 177 80.8
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 9.5e-77 290.4 180 77.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.2e-76 290.0 178 79.2
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.1e-76 287.7 182 74.7
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 8.0e-76 287.3 182 74.7
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.0e-76 287.3 182 76.4
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 2.3e-75 285.8 182 75.3
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 75.3
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.2e-75 284.6 182 75.3
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.8e-75 284.3 182 75.3
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 8.9e-75 283.9 182 74.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 8.9e-75 283.9 182 75.3
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.2e-74 283.5 183 84.7
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 74.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 74.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 4.4e-74 281.6 182 74.2
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.8e-74 281.2 182 71.4
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 5.8e-74 281.2 182 74.2
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 5.8e-74 281.2 182 74.2
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 7.5e-74 280.8 182 74.2
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.6
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.6
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 71.4
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.1
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.9e-73 278.9 182 73.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 3.7e-73 278.5 180 73.9
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 3.7e-73 278.5 182 73.6
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 3.7e-73 278.5 182 73.1
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 4.9e-73 278.1 177 76.3
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 177 76.3
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 4.9e-73 278.1 182 73.1
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 73.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 73.1
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.4e-72 275.8 182 73.6
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.2e-72 275.4 182 72.5
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 4.1e-72 275.0 182 73.1
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 4.1e-72 275.0 182 73.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 73.8
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 7.0e-72 274.2 182 73.6
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 7.0e-72 274.2 182 73.6
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 7.0e-72 274.2 182 73.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 9.2e-72 273.9 182 70.3
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.2e-72 273.9 182 70.9
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-71 273.5 182 71.4
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.2e-71 273.5 182 71.4
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.2e-71 273.5 182 71.4
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.6e-71 273.1 182 70.3
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.0e-71 272.7 182 70.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.0e-71 272.7 182 70.3
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 3.5e-71 271.9 183 73.2
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.5e-71 271.9 182 71.4
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 4.6e-71 271.6 180 72.8
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 6.0e-71 271.2 178 74.2
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.0e-70 270.4 183 69.9
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 72.0
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 69.8
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 72.5
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 69.2
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.9e-70 268.5 182 68.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.9e-70 268.5 182 68.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.0e-70 268.1 182 69.8
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-69 266.9 182 68.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.1e-69 266.9 182 68.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.5e-69 266.5 182 68.1
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.5e-69 266.5 182 71.4
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 2.5e-69 265.8 182 67.6
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 2.5e-69 265.8 178 72.5
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 2.5e-69 265.8 182 69.2
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 68.7
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 5.6e-69 264.6 181 70.2
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 5.6e-69 264.6 182 69.2
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 5.6e-69 264.6 175 72.6
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 5.6e-69 264.6 182 68.7
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 7.3e-69 264.2 182 68.1
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 7.3e-69 264.2 179 71.5
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 9.5e-69 263.8 177 71.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.6e-68 263.1 179 69.3
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.1e-68 262.7 182 68.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.4e-67 260.0 177 69.5
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.8e-67 259.6 180 67.8
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.8e-67 259.6 182 68.1
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 3.1e-67 258.8 182 66.5
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.1e-67 258.8 182 69.2
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.2e-67 258.1 182 67.6
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.2e-67 258.1 179 70.4
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 6.8e-67 257.7 178 69.1
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.2e-66 256.9 180 68.9
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.5e-66 256.5 180 68.9
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 3.4e-66 255.4 180 68.9
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 3.4e-66 255.4 178 69.7
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 4.4e-66 255.0 182 69.2
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 5.8e-66 254.6 182 65.9
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 7.5e-66 254.2 178 69.7
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.3e-65 253.4 179 68.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.3e-65 253.4 183 67.2
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 2.2e-65 252.7 170 71.8
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.7e-65 251.9 177 68.9
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 6.4e-65 251.1 182 68.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 6.4e-65 251.1 180 70.6
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 8.3e-65 250.8 182 68.1
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 8.3e-65 250.8 183 66.1
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.4e-64 250.0 180 67.2
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.2e-64 248.8 180 68.9
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 4.1e-64 248.4 183 65.6
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 9.2e-64 247.3 182 65.4
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 9.2e-64 247.3 183 65.6
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.6e-63 245.0 179 68.2
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.9e-61 239.6 179 65.4
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 4.3e-61 238.4 186 61.8
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 5.6e-61 238.0 177 67.2
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 9.5e-61 237.3 179 64.8
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.3e-59 232.6 180 63.9
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.1e-56 223.8 182 60.4
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.1e-52 209.5 176 61.4
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 2.1e-47 193.0 184 57.6
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 3.5e-47 192.2 163 60.1
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.0e-42 176.4 115 72.2
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.9e-41 172.6 121 66.1
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 4.9e-41 171.8 197 49.7
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 8.1e-36 154.5 159 49.7
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.4e-35 153.7 183 40.4
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.1e-30 135.2 99 67.7
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.9e-22 109.0 76 71.1
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.8e-20 102.8 109 52.3
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 9.3e-16 87.8 164 34.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.6e-15 87.0 52 73.1
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 5.7e-13 78.6 54 64.8
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 5.7e-13 78.6 54 64.8
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.4e-10 69.3 38 86.8


User provided reference genes

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