Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33023 Brassica carinata HOM05D003531 ORTHO05D004354 1.7e-180 636.0 334 100.0
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 4.1e-118 428.7 301 72.8
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 3.0e-113 412.5 310 69.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 8.8e-113 411.0 317 65.0
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 1.3e-111 407.1 324 63.3
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 3.5e-109 399.1 321 66.7
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 2.9e-108 396.0 286 70.6
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 5.5e-107 391.7 310 62.6
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 1.4e-105 387.1 306 62.4
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 2.3e-105 386.3 290 70.0
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 5.2e-105 385.2 308 66.2
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 2.6e-104 382.9 311 61.1
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 7.5e-104 381.3 310 60.3
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 4.8e-103 378.6 281 68.3
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 5.9e-101 371.7 300 64.7
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 5.5e-99 365.2 295 64.7
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 2.3e-97 359.8 307 63.2
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 2.0e-96 356.7 270 67.0
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 3.0e-89 332.8 342 55.0
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 1.2e-80 304.3 217 70.5
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 1.0e-73 281.2 292 51.0
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 3.1e-73 279.6 294 50.0
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 4.0e-73 279.3 298 48.7
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 5.2e-73 278.9 288 49.7
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.2e-72 277.7 288 49.7
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.2e-72 277.7 288 49.7
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 3.4e-72 276.2 287 48.1
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 2.2e-71 273.5 294 47.6
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.2e-71 273.5 286 49.0
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 6.4e-71 271.9 290 46.9
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 8.3e-71 271.6 299 46.5
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.4e-70 270.8 286 48.6
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.4e-70 270.8 286 48.6
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 2.4e-70 270.0 294 51.4
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 5.4e-70 268.9 303 47.5
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 2.0e-69 266.9 287 47.4
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 2.7e-69 266.5 301 46.5
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 4.6e-69 265.8 293 47.8
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 6.0e-69 265.4 288 52.4
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 6.0e-69 265.4 291 51.5
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.0e-68 264.6 300 49.7
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 1.0e-68 264.6 293 47.1
Migut.N01608 Erythranthe guttata HOM05D003531 ORTHO05D004354 1.3e-68 264.2 297 46.5
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.7e-68 263.8 294 49.7
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 3.9e-68 262.7 296 45.9
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 6.6e-68 261.9 296 45.9
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 8.6e-68 261.5 299 47.2
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 1.1e-67 261.2 282 50.0
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 3.3e-67 259.6 292 51.4
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 4.3e-67 259.2 293 51.2
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 4.3e-67 259.2 292 52.1
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 4.3e-67 259.2 292 45.9
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 5.6e-67 258.8 290 46.2
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 5.6e-67 258.8 298 49.3
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 1.6e-66 257.3 290 45.9
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 1.6e-66 257.3 291 46.0
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 2.1e-66 256.9 298 47.7
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 2.8e-66 256.5 286 50.0
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 4.7e-66 255.8 291 49.1
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 4.7e-66 255.8 301 46.2
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 4.7e-66 255.8 291 45.7
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 8.1e-66 255.0 299 49.2
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 8.1e-66 255.0 286 49.7
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 8.1e-66 255.0 286 49.7
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 8.1e-66 255.0 285 49.8
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 1.1e-65 254.6 298 47.0
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.4e-65 254.2 316 49.7
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 1.4e-65 254.2 291 49.5
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 1.8e-65 253.8 284 51.1
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 1.8e-65 253.8 296 49.7
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 2.3e-65 253.4 316 49.7
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 3.1e-65 253.1 298 46.3
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 4.0e-65 252.7 289 46.0
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 6.8e-65 251.9 303 46.9
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 6.8e-65 251.9 292 44.5
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 2.0e-64 250.4 284 50.0
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 2.0e-64 250.4 284 50.0
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 2.0e-64 250.4 293 45.1
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 2.6e-64 250.0 301 45.8
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 3.4e-64 249.6 282 46.8
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 4.4e-64 249.2 293 48.8
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 5.8e-64 248.8 292 44.5
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 7.5e-64 248.4 290 46.9
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 7.5e-64 248.4 296 49.3
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 9.8e-64 248.1 300 44.3
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 1.7e-63 247.3 300 48.3
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 2.2e-63 246.9 290 49.0
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 2.2e-63 246.9 290 46.9
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.9e-63 246.5 296 43.6
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 4.9e-63 245.7 292 45.9
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 4.9e-63 245.7 296 46.3
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 6.4e-63 245.4 293 46.8
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 1.1e-62 244.6 296 43.6
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 1.9e-62 243.8 312 43.3
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 3.2e-62 243.0 315 43.5
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 4.1e-62 242.7 306 44.8
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 5.4e-62 242.3 300 43.0
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 7.1e-62 241.9 294 43.2
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 9.2e-62 241.5 284 45.1
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 1.2e-61 241.1 310 44.5
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 2.1e-61 240.4 299 45.8
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 2.1e-61 240.4 298 46.6
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 3.5e-61 239.6 309 44.3
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 7.8e-61 238.4 327 44.6
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 3.0e-60 236.5 287 43.9
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 3.0e-60 236.5 288 44.4
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.0e-60 236.5 278 43.9
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 3.9e-60 236.1 346 43.1
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 8.6e-60 235.0 300 42.3
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 1.9e-59 233.8 305 42.6
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 9.5e-59 231.5 291 43.0
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 1.2e-58 231.1 307 42.7
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 3.6e-58 229.6 278 47.8
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.3e-57 226.9 319 39.5
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 2.3e-57 226.9 293 42.3
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 4.0e-57 226.1 279 47.7
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 1.2e-56 224.6 328 39.0
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 1.5e-56 224.2 303 43.6
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.0e-56 223.8 337 38.3
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 4.4e-56 222.6 292 44.5
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 5.8e-56 222.2 293 41.6
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 3.8e-55 219.5 307 42.0
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 4.9e-55 219.2 264 43.9
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 2.4e-54 216.9 277 41.5
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 7.1e-54 215.3 176 56.2
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 1.6e-53 214.2 220 49.5
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 2.7e-53 213.4 313 39.3
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 1.7e-52 210.7 176 55.1
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 3.9e-52 209.5 316 37.7
Aqoxy2G00168 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 1.1e-51 208.0 314 37.6
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 4.3e-51 206.1 156 57.7
MBI02_g23150_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 4.3e-51 206.1 297 40.7
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 4.3e-51 206.1 163 63.2
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 5.2e-49 199.1 176 58.0
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 8.9e-49 198.4 144 60.4
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 2.6e-48 196.8 154 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3832 Anthoceros agrestis HOM05D003531 ORTHO05D004354 4.4e-48 196.1 340 37.4
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 1.3e-47 194.5 274 40.5
BcaB05g24179 Brassica carinata HOM05D003531 ORTHO05D004354 3.8e-47 193.0 173 57.8
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 3.8e-47 193.0 206 44.7
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 3.2e-46 189.9 265 42.6
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 7.1e-46 188.7 161 50.3
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 1.7e-44 184.1 331 36.3
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 2.1e-42 177.2 324 34.3
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 3.6e-42 176.4 298 37.6
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 1.8e-41 174.1 319 36.7
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 5.4e-38 162.5 260 40.8
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 4.6e-37 159.5 256 38.3
BcaB01g02046 Brassica carinata HOM05D003531 ORTHO05D015800 1.5e-35 154.5 149 55.7
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.8e-33 147.5 272 35.7
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 9.0e-33 145.2 274 34.3
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 7.4e-27 125.6 298 31.5
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.8e-25 120.9 57 84.2
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.0e-23 115.2 176 36.9
SHI04073 Sapria himalayana HOM05D003531 ORTHO05D004354 1.7e-23 114.4 139 45.3
BcaC09g49888 Brassica carinata HOM05D003531 ORTHO05D015800 6.0e-21 105.9 66 69.7
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 6.0e-21 105.9 66 69.7
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.0e-20 103.6 300 30.3
Zm00001eb410840 Zea mays HOM05D003531 ORTHO05D004354 3.1e-17 93.6 44 84.1
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.0e-15 88.6 91 49.5
C02p42000 Brassica napus HOM05D003531 ORTHO05D004354 2.1e-13 80.9 70 51.4
BolC2t10232H Brassica oleracea HOM05D003531 ORTHO05D004354 1.3e-12 78.2 70 50.0
BcaC01g03307 Brassica carinata HOM05D000305 ORTHO05D000065 3.9e-12 76.6 82 58.5
C06p37170 Brassica napus HOM05D003531 ORTHO05D004354 5.1e-12 76.3 70 65.7
FAN03G0464 Fragaria x ananassa HOM05D003531 ORTHO05D004354 9.7e-11 72.0 105 41.0
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 3.1e-09 67.0 53 56.6
BcaC06g36048 Brassica carinata HOM05D003531 ORTHO05D004354 4.1e-09 66.6 48 56.2
unitig_8.g3623 Utricularia gibba HOM05D003531 ORTHO05D004354 4.1e-09 66.6 28 89.3
C03p53830 Brassica napus HOM05D000305 ORTHO05D000065 5.3e-09 66.2 60 50.0
BcaC03g16378 Brassica carinata HOM05D003531 ORTHO05D004354 1.2e-08 65.1 125 33.6
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.9e-08 62.8 82 39.0
CAN.G205.12 Capsicum annuum HOM05D003531 ORTHO05D004354 7.7e-08 62.4 28 85.7
MBI02_g05670_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 1.7e-07 61.2 25 96.0
AL4G45755 Arabidopsis lyrata HOM05D000122 ORTHO05D000139 4.2e-06 56.6 53 45.3
Solyc01g087330.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 7.2e-06 55.8 24 91.7


User provided reference genes

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