Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.1e-213 745.7 470 100.0
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 3.9e-207 724.9 470 91.1
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.1e-206 723.4 473 95.6
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-203 712.6 471 92.1
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 7.8e-200 700.7 471 95.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-185 653.3 477 82.8
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 4.6e-176 621.7 482 71.4
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.0e-175 619.0 474 78.3
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 8.7e-175 617.5 474 76.6
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.1e-174 617.1 488 75.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 4.3e-174 615.1 474 76.2
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.6e-174 614.8 481 76.5
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.6e-174 614.8 484 76.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.1e-173 612.8 484 76.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.1e-172 609.0 476 70.0
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 1.5e-171 606.7 482 68.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.5e-166 590.1 478 67.8
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.3e-150 535.8 460 62.2
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.5e-147 526.9 484 66.3
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.3e-146 523.9 483 61.3
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.4e-143 513.8 472 64.0
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.8e-143 513.5 446 69.1
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.1e-142 510.8 451 65.9
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-142 510.4 471 65.4
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 3.3e-142 509.2 471 65.2
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.4e-140 503.8 481 57.6
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.1e-140 502.7 483 62.7
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.0e-139 500.0 471 58.2
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.5e-139 498.8 471 60.9
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 7.7e-139 498.0 472 64.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.2e-138 496.5 485 62.5
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 3.8e-138 495.7 492 59.1
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.0e-138 495.4 471 59.4
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.1e-137 494.2 483 58.6
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.4e-137 493.8 471 59.4
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.4e-137 493.8 464 61.0
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.2e-137 492.7 483 61.7
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 3.2e-137 492.7 477 65.4
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 3.2e-137 492.7 480 60.6
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 5.5e-137 491.9 475 59.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 7.2e-137 491.5 454 63.7
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.6e-136 489.2 468 62.8
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 8.0e-136 488.0 481 62.6
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.3e-135 486.5 454 56.4
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.0e-135 486.1 453 63.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.6e-134 483.0 480 57.7
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.6e-134 483.0 479 61.2
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.3e-134 482.6 466 59.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.7e-134 481.9 466 59.9
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 7.4e-134 481.5 485 56.7
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 3.7e-133 479.2 465 60.0
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 6.3e-133 478.4 465 56.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 8.2e-133 478.0 474 62.4
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 8.2e-133 478.0 485 59.8
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.1e-132 476.1 474 61.8
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 5.3e-132 475.3 490 58.6
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 9.1e-132 474.6 386 64.0
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.6e-131 473.8 486 56.6
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-131 473.0 472 55.1
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 2.6e-131 473.0 476 58.2
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.5e-131 472.2 485 55.5
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 5.9e-131 471.9 330 78.2
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.0e-130 471.1 474 61.4
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.0e-130 471.1 469 61.8
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.3e-130 470.7 482 57.3
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.3e-130 470.7 469 64.8
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 3.8e-130 469.2 486 59.5
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 3.8e-130 469.2 463 59.8
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 3.8e-130 469.2 476 58.8
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 6.5e-130 468.4 482 56.8
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.5e-130 468.0 476 55.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.1e-129 467.6 480 56.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.1e-129 467.6 478 54.2
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-129 467.2 476 55.5
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.9e-129 466.8 480 61.2
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 3.2e-129 466.1 483 60.5
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.2e-129 466.1 489 54.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 4.2e-129 465.7 468 62.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 4.2e-129 465.7 485 54.4
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 7.2e-129 464.9 485 62.1
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 3.6e-128 462.6 478 55.4
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 3.6e-128 462.6 490 56.7
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.7e-128 462.2 483 62.7
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 6.1e-128 461.8 479 58.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 6.1e-128 461.8 444 56.8
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.0e-128 461.5 468 58.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 8.0e-128 461.5 479 60.8
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.4e-127 460.7 397 65.2
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.4e-127 460.7 486 54.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.4e-127 460.7 445 56.2
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 1.8e-127 460.3 486 59.5
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.3e-127 459.9 471 58.8
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.0e-127 459.1 470 53.8
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 6.7e-127 458.4 487 53.6
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.8e-127 458.0 469 57.8
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 8.8e-127 458.0 471 59.4
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 2.6e-126 456.4 481 54.1
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.3e-126 456.1 382 66.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.5e-126 454.9 471 55.2
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 9.7e-126 454.5 448 55.8
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 9.7e-126 454.5 485 56.1
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.7e-125 453.8 492 52.6
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 4.8e-125 452.2 450 54.9
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 6.3e-125 451.8 476 55.7
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.3e-125 451.4 268 82.1
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 8.3e-125 451.4 496 52.4
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.8e-124 450.3 499 52.7
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.1e-124 449.1 488 54.5
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 4.1e-124 449.1 422 56.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.2e-123 447.6 490 55.1
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 2.7e-123 446.4 475 59.8
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.7e-123 446.4 482 53.1
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 3.5e-123 446.0 470 56.0
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.5e-123 446.0 335 66.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 5.9e-123 445.3 480 55.0
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.0e-122 444.5 494 52.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.3e-122 444.1 474 56.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 5.0e-122 442.2 483 56.5
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 6.5e-122 441.8 465 55.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 6.5e-122 441.8 336 67.6
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.5e-121 440.7 492 56.1
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.5e-121 439.9 473 63.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 5.5e-121 438.7 484 58.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 9.4e-121 438.0 479 53.7
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.6e-120 437.2 331 66.5
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 6.1e-120 435.3 450 60.2
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.3e-119 433.3 466 53.9
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 4.0e-119 432.6 466 53.9
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.6e-118 429.9 470 51.3
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 7.5e-118 428.3 477 54.3
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 7.5e-118 428.3 473 58.6
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.7e-117 426.0 313 67.4
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.4e-116 423.3 485 55.3
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 5.4e-116 422.2 485 48.7
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-115 421.0 396 56.6
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.6e-115 420.6 480 51.9
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 7.2e-113 411.8 330 63.0
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.6e-112 410.6 376 55.9
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 8.9e-111 404.8 437 56.5
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.5e-110 404.1 330 60.9
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.2e-107 394.4 368 57.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.3e-106 391.0 330 66.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.9e-106 389.4 337 63.8
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.6e-104 382.9 399 51.9
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-103 380.6 378 54.5
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.3e-98 363.6 403 53.8
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.7e-93 347.4 332 53.0
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.1e-89 334.7 331 54.7
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 7.1e-84 315.5 279 59.9
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 4.7e-80 302.8 337 45.1
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.6e-72 277.7 339 46.6
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 4.2e-60 236.5 191 66.0
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.3e-56 224.9 195 75.9
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 2.5e-52 210.7 325 36.6
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 6.0e-51 206.1 363 35.5
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.5e-49 201.4 200 53.0
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.9e-45 187.2 329 44.1
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.0e-39 165.6 137 74.5
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 9.4e-36 155.6 117 62.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.1e-35 152.9 129 73.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 6.7e-34 149.4 147 53.1
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.8e-31 141.4 145 56.6
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 3.1e-31 140.6 340 30.6
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.1e-31 140.2 129 65.1
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.0e-30 137.9 98 65.3
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.6e-27 127.1 99 62.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 5.3e-23 113.2 316 30.7
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.2e-20 103.6 310 30.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 1.8e-18 98.2 336 27.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 8.2e-16 89.4 70 54.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 8.2e-16 89.4 70 54.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.5e-14 84.0 69 52.2
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 9.4e-12 75.9 109 46.8
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 6.1e-11 73.2 47 72.3
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 5.9e-06 56.6 48 54.2


User provided reference genes

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